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Information on SUBCLASS 5.5.1
Subclass Accession number: 1380
Subclass: 5.5.1 PSSM
Type: EH beta-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0005524 (>75 %)  
SCOP : 52539 (>75 %)  52540 (>75 %)  
 Number of loops: 7

Average sequence ID (%) : 17.2 +/- 17.2
Average RMSD (Å) : 0.943 +/- 0.294

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: XXXXGXphp
(φψ)-conformation: bbppgppaa
Pattern: xx[kps][knpqs][G][fmtv][DTY][ipv][DHKRS][ADQST][AILMV]x[degkr]
Conservation:-0.864-0.8260.019-0.2153.098-0.298-0.073-0.0550.001-0.0890.415-0.677-0.436
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1f0x_A_4941f0x   A500512IVKKGVDVHALKEEEETT--HHHHHHbxppvxxaaaaaa
1k8w_A_1671k8w   A173185HCSKGTYIRTIIDEE-TT--HHHHHHbbxpvxxaaaaaa
1lfw_A_3431lfw   A350362RYPQGTDPDTMIKEE-TT--HHHHHHbbwxgbbaaaaaa
1ng2_A_2801ng2   A280292LQKSGQDVSQAQREEETTS-HHHHHHbbppvbxaaaaaa
1r3e_A_1671r3e   A173185EVSPGTYIRSLCMEE-TT--HHHHHHbbxpvxbaaaaaa
1sgv_A_71sgv   A1224DKPAGMTSHDVVGEE-TT--HHHHHHxxwxgxxaaaaaa
1xxa_A_1301xxa   A134146TPANGFTVKDLYEEE-TT--HHHHHHbxxpgxxaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1f0x_A_4941f0x   A     FADFLAVIN-ADENINE DINUCLEOTIDE H - 496
1k8w_A_1671k8w   A     FHU(5S,6R)-5-FLUORO-6-HYDROXY-PSEUDOURIDINE-5'-MONOPHOSPHATE S - 175
1k8w_A_1671k8w   A     FHU(5S,6R)-5-FLUORO-6-HYDROXY-PSEUDOURIDINE-5'-MONOPHOSPHATE K - 176
1k8w_A_1671k8w   A     FHU(5S,6R)-5-FLUORO-6-HYDROXY-PSEUDOURIDINE-5'-MONOPHOSPHATE G - 177
1k8w_A_1671k8w   A     FHU(5S,6R)-5-FLUORO-6-HYDROXY-PSEUDOURIDINE-5'-MONOPHOSPHATE T - 178
1k8w_A_1671k8w   A     FHU(5S,6R)-5-FLUORO-6-HYDROXY-PSEUDOURIDINE-5'-MONOPHOSPHATE Y - 179
1k8w_A_1671k8w   A     FHU(5S,6R)-5-FLUORO-6-HYDROXY-PSEUDOURIDINE-5'-MONOPHOSPHATE I - 180
1k8w_A_1671k8w   A     FHU(5S,6R)-5-FLUORO-6-HYDROXY-PSEUDOURIDINE-5'-MONOPHOSPHATE R - 181
1k8w_A_1671k8w   A     FHU(5S,6R)-5-FLUORO-6-HYDROXY-PSEUDOURIDINE-5'-MONOPHOSPHATE T - 182
1lfw_A_3431lfw   A     AEP3-[(1-AMINO-2-CARBOXY-ETHYL)-HYDROXY-PHOSPHINOYL]-2-METHYL-PROPIONIC ACID N - 348
1lfw_A_3431lfw   A     AEP3-[(1-AMINO-2-CARBOXY-ETHYL)-HYDROXY-PHOSPHINOYL]-2-METHYL-PROPIONIC ACID R - 350
1r3e_A_1671r3e   A     FHU(5S,6R)-5-FLUORO-6-HYDROXY-PSEUDOURIDINE-5'-MONOPHOSPHATE P - 176
1r3e_A_1671r3e   A     FHU(5S,6R)-5-FLUORO-6-HYDROXY-PSEUDOURIDINE-5'-MONOPHOSPHATE S - 182

Clusters included in this Subclass
CLUSTER: EH.5.81
CLUSTER: EH.6.117