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Information on SUBCLASS 5.7.2
Subclass Accession number: 1389
Subclass: 5.7.2 PSSM
Type: EH beta-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 2.7 (>75 %)  
GO : GO:0016301 (>75 %)  GO:0016772 (>75 %)  
SCOP : 52539 (>75 %)  52540 (>75 %)  
 Number of loops: 8

Average sequence ID (%) : 31.3 +/- 22.2
Average RMSD (Å) : 0.387 +/- 0.136

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XGhXcXGKp
(φψ)-conformation: bepplagaa
Pattern: [AFLV][ILMV]x[GS][agilpv]x[GNR][acitv][G][KM][GST][ety]xxx[eknqr][ILV]
Conservation:-0.4290.567-0.5111.487-1.187-1.0170.239-0.4652.5680.9340.204-0.326-0.695-0.987-0.720-0.4040.742
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1e6c_A_61e6c   A622FMVGARGCGMTTVGRELEEEES-TTSSHHHHHHHxbbexxvavaaaaaaaa
1f5n_A_381f5n   A4258AIVGLYRTGKSYLMNKLEEEEBTTSSHHHHHHHHbbbepxvavaaaaaaaa
1ko7_A_1451ko7   A148164LITGDSGIGKSETALELEEEESTTSSHHHHHHHHbxbexpvagaaaaaaaa
1nlf_A_321nlf   A3450ALVSPGGAGKSMLALQLEEEESTTSSHHHHHHHHbbbewxvagaaaaaaaa
1nn5_A_81nn5   A1026VLEGVDRAGKSTQSRKLEEEESTTSSHHHHHHHHbbbexpvagaaaaaaaa
1puj_A_1211puj   A124140LIIGIPNVGKSTLINRLEEEESTTSSHHHHHHHHbxbexpvagaaaaaaaa
1qf9_A_71qf9   A1026FVLGGPGSGKGTQCANIEEEESTTSSHHHHHHHHxbbexpvagaaaaaaaa
4tmk_A_54tmk   A723VIEGLEGAGKTTARNVVEEEE-TTS-HHHHHHHHbbbexxvavaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e6c_A_61e6c   A     PO4PHOSPHATE ION A - 10
1e6c_A_61e6c   A     MPD2-METHYL-2,4-PENTANEDIOL A - 10
1e6c_A_61e6c   A     PO4PHOSPHATE ION R - 11
1e6c_A_61e6c   A     MPD2-METHYL-2,4-PENTANEDIOL R - 11
1e6c_A_61e6c   A     PO4PHOSPHATE ION G - 12
1e6c_A_61e6c   A     MPD2-METHYL-2,4-PENTANEDIOL G - 12
1e6c_A_61e6c   A     PO4PHOSPHATE ION C - 13
1e6c_A_61e6c   A     MPD2-METHYL-2,4-PENTANEDIOL C - 13
1e6c_A_61e6c   A     PO4PHOSPHATE ION G - 14
1e6c_A_61e6c   A     PO4PHOSPHATE ION M - 15
1e6c_A_61e6c   A     PO4PHOSPHATE ION T - 16
1e6c_A_61e6c   A     PO4PHOSPHATE ION T - 17
1f5n_A_381f5n   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER G - 45
1f5n_A_381f5n   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER L - 46
1f5n_A_381f5n   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER Y - 47
1f5n_A_381f5n   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER R - 48
1f5n_A_381f5n   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER T - 49
1f5n_A_381f5n   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER G - 50
1f5n_A_381f5n   A     MGMAGNESIUM ION K - 51
1f5n_A_381f5n   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER K - 51
1f5n_A_381f5n   A     MGMAGNESIUM ION S - 52
1f5n_A_381f5n   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER S - 52
1f5n_A_381f5n   A     MGMAGNESIUM ION Y - 53
1f5n_A_381f5n   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER Y - 53
1f5n_A_381f5n   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER L - 54
1ko7_A_1451ko7   A     PO4PHOSPHATE ION G - 151
1ko7_A_1451ko7   A     PO4PHOSPHATE ION D - 152
1ko7_A_1451ko7   A     PO4PHOSPHATE ION S - 153
1ko7_A_1451ko7   A     PO4PHOSPHATE ION G - 154
1ko7_A_1451ko7   A     PO4PHOSPHATE ION I - 155
1ko7_A_1451ko7   A     PO4PHOSPHATE ION G - 156
1ko7_A_1451ko7   A     PO4PHOSPHATE ION K - 157
1ko7_A_1451ko7   A     PO4PHOSPHATE ION S - 158
1ko7_A_1451ko7   A     PO4PHOSPHATE ION E - 159
1nn5_A_81nn5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER G - 13
1nn5_A_81nn5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER V - 14
1nn5_A_81nn5   A     2DT3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE D - 15
1nn5_A_81nn5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER D - 15
1nn5_A_81nn5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER R - 16
1nn5_A_81nn5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER A - 17
1nn5_A_81nn5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER G - 18
1nn5_A_81nn5   A     MGMAGNESIUM ION K - 19
1nn5_A_81nn5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER K - 19
1nn5_A_81nn5   A     MGMAGNESIUM ION S - 20
1nn5_A_81nn5   A     2DT3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE S - 20
1nn5_A_81nn5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER S - 20
1nn5_A_81nn5   A     MGMAGNESIUM ION T - 21
1nn5_A_81nn5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER T - 21
1nn5_A_81nn5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER Q - 22
1nn5_A_81nn5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER R - 24
1puj_A_1211puj   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER G - 127
1puj_A_1211puj   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER I - 128
1puj_A_1211puj   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER P - 129
1puj_A_1211puj   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER N - 130
1puj_A_1211puj   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER V - 131
1puj_A_1211puj   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER G - 132
1puj_A_1211puj   A     MGMAGNESIUM ION K - 133
1puj_A_1211puj   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER K - 133
1puj_A_1211puj   A     MGMAGNESIUM ION S - 134
1puj_A_1211puj   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER S - 134
1puj_A_1211puj   A     MGMAGNESIUM ION T - 135
1puj_A_1211puj   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER T - 135
1puj_A_1211puj   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER L - 136
1qf9_A_71qf9   A     ALFTETRAFLUOROALUMINATE ION G - 13
1qf9_A_71qf9   A     ADPADENOSINE-5'-DIPHOSPHATE G - 13
1qf9_A_71qf9   A     ALFTETRAFLUOROALUMINATE ION G - 14
1qf9_A_71qf9   A     ADPADENOSINE-5'-DIPHOSPHATE G - 14
1qf9_A_71qf9   A     ALFTETRAFLUOROALUMINATE ION P - 15
1qf9_A_71qf9   A     ADPADENOSINE-5'-DIPHOSPHATE P - 15
1qf9_A_71qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE P - 15
1qf9_A_71qf9   A     ALFTETRAFLUOROALUMINATE ION G - 16
1qf9_A_71qf9   A     ADPADENOSINE-5'-DIPHOSPHATE G - 16
1qf9_A_71qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE G - 16
1qf9_A_71qf9   A     ALFTETRAFLUOROALUMINATE ION S - 17
1qf9_A_71qf9   A     ADPADENOSINE-5'-DIPHOSPHATE S - 17
1qf9_A_71qf9   A     ADPADENOSINE-5'-DIPHOSPHATE G - 18
1qf9_A_71qf9   A     ALFTETRAFLUOROALUMINATE ION K - 19
1qf9_A_71qf9   A     ADPADENOSINE-5'-DIPHOSPHATE K - 19
1qf9_A_71qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE K - 19
1qf9_A_71qf9   A     ALFTETRAFLUOROALUMINATE ION G - 20
1qf9_A_71qf9   A     MGMAGNESIUM ION G - 20
1qf9_A_71qf9   A     ADPADENOSINE-5'-DIPHOSPHATE G - 20
1qf9_A_71qf9   A     ADPADENOSINE-5'-DIPHOSPHATE T - 21
1qf9_A_71qf9   A     ADPADENOSINE-5'-DIPHOSPHATE Q - 22
4tmk_A_54tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE G - 10
4tmk_A_54tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE L - 11
4tmk_A_54tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE E - 12
4tmk_A_54tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE G - 13
4tmk_A_54tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE A - 14
4tmk_A_54tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE G - 15
4tmk_A_54tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE K - 16
4tmk_A_54tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE T - 17
4tmk_A_54tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE T - 18
4tmk_A_54tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE A - 19
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1e6c_A_61e6c   A POACHAIN A WALKER TYPE A MOTIF FORMING THE P-LOOP WHICH IS THE BINDING SITE FOR THE PHOSPHATES OF ATP.G - 9
1e6c_A_61e6c   A POACHAIN A WALKER TYPE A MOTIF FORMING THE P-LOOP WHICH IS THE BINDING SITE FOR THE PHOSPHATES OF ATP.G - 14
1e6c_A_61e6c   A POACHAIN A WALKER TYPE A MOTIF FORMING THE P-LOOP WHICH IS THE BINDING SITE FOR THE PHOSPHATES OF ATP.M - 15
1e6c_A_61e6c   A POACHAIN A WALKER TYPE A MOTIF FORMING THE P-LOOP WHICH IS THE BINDING SITE FOR THE PHOSPHATES OF ATP.T - 16

Clusters included in this Subclass
CLUSTER: EH.5.44