ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 6.17.1

Subclass Accession number: 1482
Subclass: 6.17.1

PSSM

Type: EH beta-alpha
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Conserved Annotation
EC : 3.2 (>75 %)  3.2.2 (>75 %)  3.2.2.22 (>75 %)  4.2 (>75 %)  4.2.1 (>75 %)  4.2.1.24 (>75 %)  5.3 (>75 %)  5.3.1 (>75 %)  5.3.1.1
GO : GO:0000287 (>75 %)  GO:0004655 (>75 %)  GO:0004807 (>75 %)  GO:0016798 (>75 %)  GO:0016799 (>75 %)  GO:0016835 (>75 %)  GO:0016836 (>75 %)  GO:0016853 (>75 %)  GO:0016860 (>75 %)  GO:0016861 (>75 %)  GO:0030597 (>75 %)
SCOP : 51351 (>75 %)  51352 (>75 %)  51569 (>75 %)  51594 (>75 %)  56370 (>75 %)  56371 (>75 %)  56372 (>75 %)

Number of loops: 5

Average sequence ID (%) : 25.9 +/- 20.3
Average RMSD (Å) : 0.560 +/- 0.089

Consensus geometry

d (Å): 17

delta (°): 0-45

theta (°): 90-135

rho (°): 315-360

Consensus Sequence:	XphXhcXpYp
(φψ)-conformation:	bbpabpapaa

Pattern:	[KQRST]	x	[QST]	x	[AEPT]	[FTY]	[DGNS]	[EGS]	[ADNS]	[Y]	[DEPQT]	[ADRT]	[IL]	[EQ]	[KQRT]	[alvy]	[A]
Conservation:	-0.492	-1.019	-0.104	-0.517	-0.559	0.305	-0.197	-0.108	-0.356	2.919	-0.584	-0.835	0.765	0.944	-0.204	-1.156	1.202

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1lp8_A_112	1lp8	A	112	128	QKQLEYGEDYQAIEKNA	EEE-SS-SSHHHHHHHH	xbxxabxaxaaaaaaaa
1m2t_A_105	1m2t	A	106	122	SSSQPFNGSYPDLERYA	EEE-SS-SSHHHHHHHH	xbxxabxaxaaaaaaaa
1mrj_*_101	1mrj	-	102	118	KVTLPYSGNYERLQTAA	EEE-SS-SSHHHHHHHH	bbxxabxaxaaaaaaaa
1r4p_A_104	1r4p	A	105	121	TVSMTTDSSYTTLQRVA	EEE-SS---HHHHHHHH	xbxxaxxaxaaaaaaaa
1uq5_A_113	1uq5	A	114	130	RYTFAFGGAYDRLEQLA	EEE-SS---HHHHHHHH	bbbxabxaxaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1m2t_A_105	1m2t	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 112
1m2t_A_105	1m2t	A	ADEADENINE	G - 113
1m2t_A_105	1m2t	A	NAGN-ACETYL-D-GLUCOSAMINE	S - 114
1m2t_A_105	1m2t	A	ADEADENINE	S - 114
1m2t_A_105	1m2t	A	ADEADENINE	Y - 115
1m2t_A_105	1m2t	A	NAGN-ACETYL-D-GLUCOSAMINE	P - 116
1m2t_A_105	1m2t	A	NAGN-ACETYL-D-GLUCOSAMINE	D - 117
1m2t_A_105	1m2t	A	ADEADENINE	L - 118
1m2t_A_105	1m2t	A	NAGN-ACETYL-D-GLUCOSAMINE	R - 120
1m2t_A_105	1m2t	A	GOLGLYCEROL	Y - 121
1mrj_*_101	1mrj	*	ADNADENOSINE	S - 108
1mrj_*_101	1mrj	*	ADNADENOSINE	G - 109
1mrj_*_101	1mrj	*	ADNADENOSINE	N - 110
1mrj_*_101	1mrj	*	ADNADENOSINE	Y - 111
1mrj_*_101	1mrj	*	ADNADENOSINE	E - 112
1mrj_*_101	1mrj	*	ADNADENOSINE	L - 114
1r4p_A_104	1r4p	A	FMTFORMIC ACID	T - 109
1r4p_A_104	1r4p	A	FMTFORMIC ACID	T - 110
1r4p_A_104	1r4p	A	FMTFORMIC ACID	D - 111
1r4p_A_104	1r4p	A	FMTFORMIC ACID	S - 112
1r4p_A_104	1r4p	A	FMTFORMIC ACID	S - 113
1r4p_A_104	1r4p	A	FMTFORMIC ACID	Y - 114
1r4p_A_104	1r4p	A	FMTFORMIC ACID	T - 116
1r4p_A_104	1r4p	A	FMTFORMIC ACID	L - 117
1r4p_A_104	1r4p	A	FMTFORMIC ACID	R - 119
1r4p_A_104	1r4p	A	FMTFORMIC ACID	V - 120

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1uq5_A_113	1uq5	A	AC2SO4 BINDING SITE FOR CHAIN A	F - 119
1uq5_A_113	1uq5	A	AC2SO4 BINDING SITE FOR CHAIN A	G - 120
1uq5_A_113	1uq5	A	AC2SO4 BINDING SITE FOR CHAIN A	R - 125

Clusters included in this Subclass

CLUSTER: EH.6.49