ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 6.39.1

Subclass Accession number: 1504
Subclass: 6.39.1

Type: EH beta-alpha
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 2.1 (>75 %)  2.1.1 (>75 %)  2.7 (>75 %)  2.7.7 (>75 %)  2.7.7.18
GO : GO:0003676 (>50 %)  GO:0003677 (>50 %)  GO:0004515 (>50 %)  GO:0008168 (>75 %)  GO:0008170 (>75 %)  GO:0008757 (>75 %)  GO:0009008 (>50 %)  GO:0016741 (>75 %)  GO:0016772 (>75 %)  GO:0016779 (>75 %)
SCOP : 52373 (>75 %)  52374 (>75 %)  52397 (>75 %)  53334 (>75 %)  53335 (>75 %)  53377 (>50 %)

Number of loops: 3

Average sequence ID (%) : 33.3 +/- 16.9
Average RMSD (Å) : 0.467 +/- 0.115

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	hGpFcPhpph
(φψ)-conformation:	bealbwpbaa

Pattern:	x	[AGL]	[IL]	[AF]	[CG]	[G]	[ST]	[F]	[DN]	[P]	[IPV]	[HT]	[NY]	[GM]	[H]	[L]	x	[MP]	[AFV]	[EN]	x	[ALV]	x	[DNY]	x
Conservation:	-0.780	-1.045	0.211	-0.348	-0.217	1.607	0.152	1.607	0.474	2.084	-0.674	0.082	-0.097	-0.503	2.562	0.652	-0.727	-0.290	-0.833	0.088	-0.833	-0.621	-0.992	-0.674	-0.886

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1k4k_A_5	1k4k	A	5	29	QALFGGTFDPVHYGHLKPVETLANL	EEEEEE--TT--HHHHHHHHHHHHH	bbbbbealbwxbaaaaaaaaaaaaa
1kam_A_3	1kam	A	4	28	IGIFGGTFDPPHNGHLLMANEVLYQ	EEEEEE--SS--HHHHHHHHHHHHH	bxxbxealbwwbaaaaaaaaaaaaa
1nup_A_5	1nup	A	8	32	VLLACGSFNPITNMHLRMFEVARDH	EEEEEE--TT--HHHHHHHHHHHHH	bbbbbealbwxbaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1k4k_A_5	1k4k	A	XEXENON	L - 7
1k4k_A_5	1k4k	A	XEXENON	F - 8
1k4k_A_5	1k4k	A	XEXENON	G - 9
1k4k_A_5	1k4k	A	XEXENON	F - 12
1k4k_A_5	1k4k	A	XEXENON	V - 15
1k4k_A_5	1k4k	A	XEXENON	H - 16
1k4k_A_5	1k4k	A	XEXENON	H - 19
1k4k_A_5	1k4k	A	XEXENON	L - 20
1nup_A_5	1nup	A	NMNBETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE	C - 12
1nup_A_5	1nup	A	NMNBETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE	G - 13
1nup_A_5	1nup	A	NMNBETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE	S - 14

Clusters included in this Subclass