ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 11.4.1

Subclass Accession number: 1580
Subclass: 11.4.1

Type: EH beta-alpha
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 1.1 (>75 %)  1.1.1 (>75 %)  3.4 (>75 %)  3.4 (>75 %)  3.4.17 (>75 %)  3.4.17 (>75 %)
GO : GO:0004180 (>75 %)  GO:0004180 (>75 %)  GO:0008233 (>75 %)  GO:0008233 (>75 %)  GO:0008235 (>75 %)  GO:0008235 (>75 %)  GO:0008237 (>75 %)  GO:0008237 (>75 %)  GO:0008238 (>75 %)  GO:0008238 (>75 %)  GO:0016614 (>75 %)  GO:0016615 (>50 %)  GO:0016616 (>75 %)
SCOP : 51734 (>75 %)  51735 (>75 %)  51848 (>75 %)  53162 (>50 %)  53187 (>50 %)  53188 (>50 %)  54861 (>75 %)  54897 (>75 %)  54898 (>75 %)

Number of loops: 3

Average sequence ID (%) : 35.1 +/- 23.6
Average RMSD (Å) : 0.700 +/- 0.200

Consensus geometry

d (Å): 21

delta (°): 0-45

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	hhXhhXXpcPGXpRX
(φψ)-conformation:	bpapbppppplppaa

Pattern:	[MVW]	[AV]	[LV]	[IL]	[ITV]	[AG]	[AG]	[KPR]	[PR]	[QR]	[GK]	[P]	[G]	[MQ]	[ES]	[R]	[AKL]	[ADE]	[L]	[LV]	[DEG]	[AI]	[NT]	[AGV]	[NQ]	[I]	[FL]	[AKT]	[ADV]	x	[GM]	[KP]	[AN]	[IL]	[DNV]	[AK]	[V]
Conservation:	-0.620	-0.279	0.065	0.409	-0.386	0.180	-0.021	-0.542	-0.149	0.423	-0.379	3.204	2.501	0.079	-0.049	1.799	-1.322	-0.698	1.097	0.065	-0.542	-0.503	0.309	-1.088	0.208	1.097	0.180	-0.932	-1.401	-1.081	-0.723	-0.007	-0.709	0.457	-1.244	-0.494	1.097

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1b8p_A_86	1b8p	A	86	122	VALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAV	EEEE-------TT--HHHHHHHHHHHHHHHHHHHHHH	bbbxaxbxxxxxvxxaaaaaaaaaaaaaaaaaaaaaa
1lld_A_78	1lld	A	78	114	MVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV	EEEE-------TT--HHHHHHHHHHHHHHHHHHHHHH	bbbxaxbxxxbxlxxaaaaaaaaaaaaaaaaaaaaaa
7mdh_A_125	7mdh	A	125	161	WALLIGAKPRGPGMERAALLDINGQIFADQGKALNAV	EEEE-------TT--HHHHHHHHHHHHHHHHHHHHHH	bbxxapbxxpxxlbxaaaaaaaaaaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1lld_A_78	1lld	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	T - 82
1lld_A_78	1lld	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	A - 83
1lld_A_78	1lld	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	G - 84
1lld_A_78	1lld	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	P - 85
1lld_A_78	1lld	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	R - 86
1lld_A_78	1lld	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	Q - 87
1lld_A_78	1lld	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	I - 103
1lld_A_78	1lld	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	A - 106
1lld_A_78	1lld	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	I - 107

Clusters included in this Subclass