ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.6.1

Subclass Accession number: 159
Subclass: 2.6.1

PSSM

Type: HE alpha-beta
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 15

Average sequence ID (%) : 7.3 +/- 11.4
Average RMSD (Å) : 0.727 +/- 0.209

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 45-90

rho (°): 90-135

Consensus Sequence:	XXXXhX
(φψ)-conformation:	aabpbb

Pattern:	x	[acfilwy]	x	x	x	[dekpst]	[cfltvwy]	x
Conservation:	-1.224	-0.556	0.623	-0.623	-0.862	1.335	1.374	-0.065

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1e79_D_138	1e79	D	140	147	VDLLAPYA	HHHHS-EE	aaaabpxb
1eaf_*_416	1eaf	-	428	435	SWLNVPHV	HHHHS-EE	aaaabxxb
1fx2_A_1075	1fx2	A	1077	1084	DRKQIDVT	HHHT--EE	aaaabbbb
1j3b_A_80	1j3b	A	93	100	YLSERDLY	HHHTS-EE	aaaabpbb
1jdr_A_201	1jdr	A	205	212	NLLNEDWK	HHHHS-EE	aaaaxxxb
1jer_*_21	1jer	-	25	32	WAAGKTFR	HHHT--EE	aaaabbbb
1ji1_A_128	1ji1	A	129	136	WLKNGVMY	HHHH--EE	aaaaxbbb
1m2o_A_618	1m2o	A	622	629	LIMIQPTL	HHHHS-EE	aaaabpxb
1mnn_A_127	1mnn	A	129	136	TFLKSSFD	HHHHS-EE	aaaaxbbb
1mwv_A_340	1mwv	A	344	351	NLFGYEWE	HHHHS-EE	aaaabbbb
1qi9_A_210	1qi9	A	210	217	QLLVNSFT	HHHHS-EE	aaaaxxbb
1qqp_3_44	1qqp	3	47	54	VAEACPTF	HHHH--EE	aaaabxbx
1ro2_A_124	1ro2	A	130	137	LCRKTLCT	HHHHS-EE	aaaabxbb
1st0_A_311	1st0	A	311	318	HYQQRTLT	HHHHS-EE	aaaaxxbb
1v8a_A_251	1v8a	A	254	261	IRTYAKVR	HHHH--EE	aaaapbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1j3b_A_80	1j3b	A	GOLGLYCEROL	Y - 93
1j3b_A_80	1j3b	A	GOLGLYCEROL	R - 97

Clusters included in this Subclass

CLUSTER: HE.2.26

CLUSTER: HE.3.33