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Information on SUBCLASS 1.1.5
Subclass Accession number: 1596
Subclass: 1.1.5 PSSM
Type: AR beta-beta link
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
SCOP : 51904 (>75 %)  51905 (>75 %)  
 Number of loops: 27

Average sequence ID (%) : 5.8 +/- 9.9
Average RMSD (Å) : 0.581 +/- 0.147

Consensus geometry
d (Å): 9 delta (°): 0-45 theta (°): 45-90 rho (°): 90-135
Consensus Sequence: XXpXX
(φψ)-conformation: bbabb
Pattern: xxxxxxxx
Conservation:-1.0000.849-0.5701.357-0.8890.348-1.096-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1azz_A_811azz   A8390IQSTDFTVEEE--EEEbxbabbbx
1ckq_A_551ckq   A5662RYRDSIK.EEES-EE.bbbabbx.
1dhk_B_391dhk   B4350AFYSAPIQEEESS-EEbbxaxxbx
1dyp_A_1591dyp   A163168EIDVVE..EE-SEE..bbbabb..
1eje_A_411eje   A4451APFSFTMPEEE-SEEEbxbaxbbx
1fl0_A_2221fl0   A222227.LSQAMV..EE--EE..xxabbx.
1gd7_A_771gd7   A7783FLSEVLV.EEE-SEE.xxbabbx.
1gqp_A_2461gqp   A246252.HLRGIRL.EES-EEE.bbabbbb
1h6l_A_3311h6l   A334341AQNGENIDEEESS-EEbxbabxbb
1hxr_A_621hxr   A6370DVLEEHWLEEE--EEEbxxabbbx
1j79_A_3401j79   A340345.TVRWSV..EES-EE..xxabbx.
1jy1_A_5061jy1   A506512.KIAWFLV.EES-EEE.bbabbbb
1jz7_A_1381jz7   A141147IIFDGVN.EEES-EE.bbbabbb.
1k0i_A_701k0i   A7077LVHEGVEIEEES-EEEbxbabbbb
1kk8_A_2401kk8   A240246.SSRFGKF.EESSEEE.xxabxbb
1ks9_A_1131ks9   A116123GTTTHAAREEE--EEEbbbaxbbb
1ln1_A_1501ln1   A150157IRVKQYKQEEE--EEExxxabbbb
1mdw_A_1481mdw   A153160VVDDRLPTEEES-EEEbbxaxbwb
1nbw_A_781nbw   A8491METITETIEEE-EEEEbbxabbbb
1qwy_A_2091qwy   A209215.AHYGVDY.EE-SEEE.xbabbbb
1rl4_A_1641rl4   A167174ERPSIVSIEEES-EEExbpabbbb
1rmg_*_721rmg   -7683IQLDGIIYEEE-SEEEbbxabbbb
1tyv_*_1661tyv   -167174IECKAKFIEEE-SEEExbbabbbb
1urs_A_1321urs   A132138.TMYSVPV.EE-SEEE.bxabbwa
2rsp_A_732rsp   A7481RKSRDMIEEEESS-EEbbxaxxbx
3mbp_*_1023mbp   -102108.KLIAYPI.EE-SEEE.xxabxxa
3thi_A_1043thi   A104110.EVYGLPQ.EE--EEE.bxabbpa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dyp_A_1591dyp   A     MSESELENOMETHIONINE Y - 161
1dyp_A_1591dyp   A     MSESELENOMETHIONINE S - 162
1dyp_A_1591dyp   A     MSESELENOMETHIONINE E - 163
1dyp_A_1591dyp   A     CDCADMIUM ION E - 163
1dyp_A_1591dyp   A     MSESELENOMETHIONINE I - 164
1dyp_A_1591dyp   A     MSESELENOMETHIONINE D - 165
1dyp_A_1591dyp   A     CDCADMIUM ION D - 165
1dyp_A_1591dyp   A     MSESELENOMETHIONINE V - 166
1dyp_A_1591dyp   A     CDCADMIUM ION E - 168
1eje_A_411eje   A     NINICKEL (II) ION N - 42
1eje_A_411eje   A     FMNFLAVIN MONONUCLEOTIDE N - 42
1eje_A_411eje   A     NINICKEL (II) ION A - 43
1eje_A_411eje   A     FMNFLAVIN MONONUCLEOTIDE A - 43
1eje_A_411eje   A     NINICKEL (II) ION A - 44
1eje_A_411eje   A     FMNFLAVIN MONONUCLEOTIDE A - 44
1eje_A_411eje   A     FMNFLAVIN MONONUCLEOTIDE P - 45
1eje_A_411eje   A     FMNFLAVIN MONONUCLEOTIDE F - 46
1eje_A_411eje   A     FMNFLAVIN MONONUCLEOTIDE S - 47
1eje_A_411eje   A     FMNFLAVIN MONONUCLEOTIDE F - 48
1eje_A_411eje   A     FMNFLAVIN MONONUCLEOTIDE T - 49
1h6l_A_3311h6l   A     CACALCIUM ION Q - 335
1h6l_A_3311h6l   A     CACALCIUM ION N - 336
1h6l_A_3311h6l   A     CACALCIUM ION G - 337
1h6l_A_3311h6l   A     CACALCIUM ION E - 338
1h6l_A_3311h6l   A     CACALCIUM ION N - 339
1h6l_A_3311h6l   A     CACALCIUM ION I - 340
1h6l_A_3311h6l   A     CACALCIUM ION D - 341
1jy1_A_5061jy1   A     MSESELENOMETHIONINE K - 506
1jy1_A_5061jy1   A     MSESELENOMETHIONINE I - 507
1jy1_A_5061jy1   A     MSESELENOMETHIONINE W - 509
1jy1_A_5061jy1   A     MSESELENOMETHIONINE F - 510
1jy1_A_5061jy1   A     MSESELENOMETHIONINE L - 511
1kk8_A_2401kk8   A     MGMAGNESIUM ION S - 240
1kk8_A_2401kk8   A     BEFBERYLLIUM TRIFLUORIDE ION S - 240
1kk8_A_2401kk8   A     ADPADENOSINE-5'-DIPHOSPHATE S - 240
1kk8_A_2401kk8   A     GOLGLYCEROL S - 240
1kk8_A_2401kk8   A     MGMAGNESIUM ION S - 241
1kk8_A_2401kk8   A     BEFBERYLLIUM TRIFLUORIDE ION S - 241
1kk8_A_2401kk8   A     ADPADENOSINE-5'-DIPHOSPHATE S - 241
1kk8_A_2401kk8   A     BEFBERYLLIUM TRIFLUORIDE ION R - 242
1kk8_A_2401kk8   A     GOLGLYCEROL R - 242
1ln1_A_1501ln1   A     DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE Y - 155
1ln1_A_1501ln1   A     DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE Q - 157
1ln1_A_1501ln1   A     DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE L - 159
1ln1_A_1501ln1   A     DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE A - 160
1ln1_A_1501ln1   A     DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE I - 161
1qwy_A_2091qwy   A     ZNZINC ION H - 210
1qwy_A_2091qwy   A     ZNZINC ION G - 212
1qwy_A_2091qwy   A     ZNZINC ION V - 213
1qwy_A_2091qwy   A     ZNZINC ION D - 214
1rl4_A_1641rl4   A     BL52-{N'-[2-(5-AMINO-1-PHENYLCARBAMOYL-PENTYLCARBAMOYL)-HEXYL]-HYDRAZINOMETHYL}-HEXANOIC ACID(5-AMINO-1-PHENYLCARBAMOYL-PENTYL)-AMIDE K - 165
1rmg_*_721rmg   *     NAGN-ACETYL-D-GLUCOSAMINE Y - 83
1rmg_*_721rmg   *     MANALPHA-D-MANNOSE Y - 83
1rmg_*_721rmg   *     NAGN-ACETYL-D-GLUCOSAMINE R - 84
1urs_A_1321urs   A     MLRMALTOTRIOSE Q - 141
3mbp_*_1023mbp   *     GLCGLUCOSE E - 111
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h6l_A_3311h6l   A AC2STRUCTURAL CA 402 BINDING SITE FOR CHAIN AN - 336
1h6l_A_3311h6l   A AC2STRUCTURAL CA 402 BINDING SITE FOR CHAIN AE - 338
1h6l_A_3311h6l   A AC1STRUCTURAL CA 401 BINDING SITE FOR CHAIN AN - 339
1h6l_A_3311h6l   A AC1STRUCTURAL CA 401 BINDING SITE FOR CHAIN AI - 340
1h6l_A_3311h6l   A AC1STRUCTURAL CA 401 BINDING SITE FOR CHAIN AD - 341
3thi_A_1043thi   A NUCCYS 113 IS THE ACTIVE SITE NUCLEOPHILE.C - 113

Clusters included in this Subclass
CLUSTER: AR.1.32
CLUSTER: AR.2.17
CLUSTER: AR.3.19