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Information on SUBCLASS 1.2.1
Subclass Accession number: 1618
Subclass: 1.2.1 PSSM
Type: AR beta-beta link
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
SCOP : 51125 (>75 %)  51125 (>75 %)  51126 (>75 %)  51126 (>75 %)  
Number of loops: 113

Average sequence ID (%) : 11.1 +/- 14.7
Average RMSD (Å) : 0.334 +/- 0.135

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: hXXXX
(φψ)-conformation: bblbb
Pattern: xx[acfgilmpvwy]x[adegknqrs][acgnpstv]x[acfgilmvy]
Conservation:-1.000-0.494-0.512-0.5561.550-0.483-0.8541.349
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8i_*_2121a8i   -213220AKWVDTQVEEEES-EExbxbvxxb
1agj_A_841agj   A8592SFRPSINTEEEET-EEbbbxlxbb
1b8p_A_1811b8p   A181186..IEKLFV..EES-EE..xblxbb
1bf2_*_7281bf2   -730737IGGAGTTYEESTT-EEaebpgpbb
1bhe_*_2101bhe   -212219ITIAYSNIEEEES-EEbbbblbbb
1bn8_A_1391bn8   A139145.KVVGGNF.EEES-EE.bbbvxbx
1bn8_A_1501bn8   A152159VIIRNIEFEEEES-EEbbbbvbxb
1bn8_A_1921bn8   A194201IWIDHCTFEEEES-EEbbbblbbb
1bn8_A_2331bn8   A235242ITMSYNYYEEEES-EEbbbblxbb
1bn8_A_2661bn8   A266273ITLHHNRYEEEES-EEbbbblxbb
1bn8_A_2871bn8   A288295VHVYNNYYEEEES-EEbxbblbbb
1bn8_A_3171bn8   A318325IYAQNNVIEEEES-EExbbblbbb
1bn8_A_3461bn8   A346352.YDSGTLL.EEES-EE.bbbvxbb
1bob_*_491bob   -4954..YKDLII..EES-EE..bblxbb
1cqq_A_1301cqq   A130137NQTARMLKEEE-SEEExxbxlxxb
1cwv_A_8171cwv   A817824TIFKNATFEEETT-EEbbbpvxbb
1e30_A_591e30   A5964..KKNPTL..EES-EE..bxlxxb
1ee6_A_1661ee6   A167174GRIVNTRYEEEES-EEbbbblbxb
1ee6_A_1891ee6   A189196TTASGNTQEEEES-EEbbbbvxbx
1f00_I_7751f00   I775782VWLQYGQVEEETT-EEbbxpvxbb
1f0l_A_121f0l   A1219FVMENFSSEEEET-EEbbbxlxbb
1f8r_A_2551f8r   A255261.VHFNAQV.EESS-EE.bbxlbxx
1fid_*_2571fid   -260267ADYAMFKVEEEES-EEbbbxlxbb
1fxj_A_2971fxj   A297303.VIKNSVI.EEES-EE.bbblbbb
1fxj_A_3141fxj   A314320.VVEDANL.EEES-EE.bbblbbb
1g97_A_2971g97   A297303.YVVDSTI.EEES-EE.bbblbbb
1g97_A_3081g97   A308314.VITNSMI.EE-S-EE.bbxlbbb
1g97_A_3131g97   A313319.MIEESSV.EEES-EE.bbblbbb
1g97_A_3761g97   A376383NFGAGTITEE-TT-EEbxxpvxbb
1gkp_A_31gkp   A310LLIKNGEIEEEES-EEbbbbvxbx
1gq8_A_1441gq8   A145152QFFINCFIEEEES-EEbbbblbbb
1gq8_A_1641gq8   A165172VVLQDCDIEEEES-EEbbbblbbb
1gq8_A_1981gq8   A199206IVIQKSRIEEEES-EEbbbblbbb
1gq8_A_2321gq8   A233240TVVMQSSIEEEES-EEbbbblbbb
1h2k_A_1861h2k   A189196IGMEGNVTEE-TT-EEbbxpvxbb
1hg8_A_1391hg8   A139146SKITNLNIEEEES-EExbbbvbbb
1hg8_A_3451hg8   A348355FTFSGNAIEEEES-EExbbbvxbx
1ia9_A_17611ia9   A17611768LLVLDLQGEEEE--EEbbbbvxbe
1j2z_A_1301j2z   A130137ILANGVTLEE-TT-EEbbxpvxbb
1j2z_A_1541j2z   A154161AIHQFVRIEE-TT-EEbbxpvxbb
1j2z_A_331j2z   A3340KLDEGVKLEE-TT-EEbbxpvxbb
1j2z_A_391j2z   A3946KLHNNVTLEE-TT-EEbbxxlxbb
1j3b_A_2941j3b   A294300.ILENVVV.EEES-EE.bbxvxxb
1jpz_A_4391jpz   A439446LKPEGFVVEEESS-EEbbxbvxbb
1ju2_A_2091ju2   A210217RVGVHASVEEEES-EEbbbblbxx
1jva_A_2851jva   A285291.FAKGTNV.EETT-EE.bxxvpxb
1k5c_A_1621k5c   A162169VTIQNCIVEEEES-EEbbbbvxbb
1kbz_A_1461kbz   A149155FRTSWVY.EEE-SEE.bxbblxb.
1kcx_A_171kcx   A1724LLIRGGRIEEEES-EEbbbbvxbx
1khb_A_3561khb   A356362.IFTNVAE.EEES-EE.bbbvxxb
1kid_*_2131kid   -213220VELESPFIEEEES-EEbbbxlxxb
1l0s_A_281l0s   A3037SEVFGTTCEEEES-EEbbbblbbb
1l0s_A_811l0s   A8187.KISGCTF.EEES-EE.bbblbbb
1lvl_*_2281lvl   -228235ALHLGHSVEEETT-EExbxxvxbx
1ly2_A_211ly2   A2127.IAVGTVI.EETT-EE.xxxgxbb
1mo9_A_2711mo9   A271278EIISGSNVEEESS-EEbbbxlbbx
1o88_A_1131o88   A113120VVVQNMRIEEEES-EEbbbblbbb
1o88_A_1411o88   A141148VWVDHNELEEEES-EEbbbblbbb
1o88_A_2041o88   A205212ITYHHNYYEEEES-EEbbbbvxbb
1o88_A_2261o88   A227234VHAYNNLYEEEES-EEbbbblxbb
1o88_A_2491o88   A250257ALIENNWFEEEES-EEbbbblbbb
1odo_A_3081odo   A308315TIARGEPIEE-TT-EEbxxpvxxb
1ofm_A_1291ofm   A129135.RITACVF.EEES-EE.bbblbbb
1ofm_A_1611ofm   A161167.RIDHCSF.EEES-EE.bbblbbb
1ofm_A_1991ofm   A199205.RVDHCFF.EEES-EE.bbblbbb
1ofm_A_2311ofm   A231237.LVDSNLF.EEES-EE.bbblbbb
1ofm_A_2551ofm   A255261.VYYGNTY.EEES-EE.bbbvxbb
1ofm_A_2771ofm   A277283.VAINNFY.EEES-EE.bbblxbb
1ofm_A_3031ofm   A303309.VIACNYF.EEES-EE.bbblxbb
1ofm_A_3411ofm   A341347.LIANNAF.EEES-EE.bbblxbb
1ofm_A_3821ofm   A382388.MLKGNLF.EEES-EE.bbbvxbb
1ofm_A_4101ofm   A410416.SWTGNVA.EEES-EE.bbbvxbb
1ofm_A_521ofm   A5259GTYKDVQLEEEET-EEebbxvxbx
1ofm_A_961ofm   A96103LILEGIWFEEEES-EEbbbbvbbx
1ogm_X_3331ogm   X335342WYCVGPTIEEEES-EExbbbgpbb
1onw_A_101onw   A1017TLLQGAHLEEEES-EEbbxbvxxx
1os1_A_3091os1   A309315.LLENVTV.EEES-EE.bxbvxxb
1pe9_A_1141pe9   A116123VIIRNVYIEEEES-EEbbbblbbb
1pe9_A_1531pe9   A155162VWIDHVTIEEEES-EEbbbblbbb
1pe9_A_1941pe9   A196203VTISNSLIEEEES-EEbbbblbbb
1pe9_A_2271pe9   A228235VTLFNNVFEEEES-EEbbbblbbb
1pe9_A_2791pe9   A280287VLSEGNSFEEEES-EEbbbblxbb
1pe9_A_3081pe9   A309316FSDNGSVLEEEES-EEbbbbvxbb
1pe9_A_991pe9   A99105.KFINGSL.EEESSEE.bbbvbbx
1pn2_A_1231pn2   A131138YFIRNCQAEEETT-EEbbbxvbbb
1ps9_A_5891ps9   A589596KMIPGVSYEEE-S-EEbbbxvxbx
1qcx_A_1351qcx   A135142VIIQNIAVEEEES-EEbbbblbbb
1qcx_A_1871qcx   A189196VTISYSLIEEEES-EEbbbblbbb
1qcx_A_2211qcx   A223230VTLKGNYFEEEES-EEbbbblxbb
1qjv_A_1861qjv   A187194SFFSDCRIEEEES-EEbbbblbbb
1qjv_A_2061qjv   A207214ALFNNCDLEEEES-EEbbbblbxx
1qjv_A_2441qjv   A244251LVITNSRVEEEES-EExbbblbbx
1qjv_A_2881qjv   A289296TVFLNTSMEEEES-EEbbbblbxb
1qlw_A_431qlw   A4451TVTVDQMYEEEES-EEbbbbvxbx
1qre_A_1071qre   A108115YIGNNVSLEE-TT-EEbbxxlbbb
1qre_A_1491qre   A149156VLEPRSAAEE-TT-EEbbxpvxbb
1qre_A_1551qre   A155161.AAIGVTI.EEES-EE.bbbvbbx
1qre_A_511qre   A5158MVSPMASIEE-TT-EEbbxpvxbb
1qre_A_731qre   A7380NVQDGVVLEE-TT-EEbbxxvxbb
1ru4_A_1651ru4   A165171.TFENTAF.EEES-EE.bbblbbb
1ru4_A_1891ru4   A189195.TVINSDA.EEES-EE.bbblbbb
1ru4_A_2221ru4   A222228.RFVGCRA.EEES-EE.bbbvxbb
1ru4_A_2461ru4   A246252.VIENSWA.EEES-EE.bbblbbb
1ru4_A_2841ru4   A284290.RITRSVA.EEES-EE.bbblbbb
1ru4_A_3081ru4   A308314.TVINNTS.EEES-EE.xbblbbb
1ru4_A_3331ru4   A333340HYFRNNVSEEEES-EExbbblxbb
1tol_A_131tol   A1522NSFTNVWKEEESS-EEbbbbvxbb
1trb_*_1991trb   -200207ILHTNRTLEEE-S-EEbxbxlbbx
1tyv_*_1891tyv   -189195.RIAGVFM.EEES-EE.bbbvpbx
1tyv_*_3481tyv   -348354.GVIGFTS.EEES-EE.ebbvbbb
1uxz_A_131uxz   A1319.QQSGTQQ.EEES-EE.bbbvbbx
3lad_A_2363lad   A237244KILLGARVEEEET-EEbxbxvxbx
7mdh_A_2207mdh   A220225..VSNVTI..EE--EE..bblxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cqq_A_1301cqq   A     AG74-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE -3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER N - 130
1cqq_A_1301cqq   A     AG74-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE -3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER T - 132
1f0l_A_121f0l   A     APUADENYLYL-3'-5'-PHOSPHO-URIDINE-3'-MONOPHOSPHATE Y - 20
1f0l_A_121f0l   A     APUADENYLYL-3'-5'-PHOSPHO-URIDINE-3'-MONOPHOSPHATE H - 21
1f0l_A_121f0l   A     APUADENYLYL-3'-5'-PHOSPHO-URIDINE-3'-MONOPHOSPHATE G - 22
1f0l_A_121f0l   A     APUADENYLYL-3'-5'-PHOSPHO-URIDINE-3'-MONOPHOSPHATE T - 23
1f8r_A_2551f8r   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 259
1f8r_A_2551f8r   A     FADFLAVIN-ADENINE DINUCLEOTIDE Q - 260
1f8r_A_2551f8r   A     FADFLAVIN-ADENINE DINUCLEOTIDE V - 261
1f8r_A_2551f8r   A     FADFLAVIN-ADENINE DINUCLEOTIDE I - 262
1h2k_A_1861h2k   A     OGAN-OXALYOLGLYCINE L - 186
1h2k_A_1861h2k   A     OGAN-OXALYOLGLYCINE L - 188
1h2k_A_1861h2k   A     OGAN-OXALYOLGLYCINE V - 195
1h2k_A_1861h2k   A     FE2FE (II) ION T - 196
1h2k_A_1861h2k   A     OGAN-OXALYOLGLYCINE T - 196
1h2k_A_1861h2k   A     FE2FE (II) ION H - 199
1h2k_A_1861h2k   A     OGAN-OXALYOLGLYCINE H - 199
1hg8_A_1391hg8   A     NAGN-ACETYL-D-GLUCOSAMINE K - 140
1ia9_A_17611ia9   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER D - 1765
1ia9_A_17611ia9   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER Q - 1767
1ia9_A_17611ia9   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER V - 1769
1j2z_A_391j2z   A     TARD(-)-TARTARIC ACID L - 46
1j2z_A_1301j2z   A     SOG2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4, 5-TRIOL T - 136
1j2z_A_1301j2z   A     SOG2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4, 5-TRIOL L - 137
1j2z_A_1541j2z   A     SOG2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4, 5-TRIOL H - 156
1j2z_A_1541j2z   A     SOG2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4, 5-TRIOL Q - 157
1ju2_A_2091ju2   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 215
1ju2_A_2091ju2   A     FADFLAVIN-ADENINE DINUCLEOTIDE S - 216
1ju2_A_2091ju2   A     FADFLAVIN-ADENINE DINUCLEOTIDE V - 217
1ju2_A_2091ju2   A     FADFLAVIN-ADENINE DINUCLEOTIDE E - 218
1khb_A_3561khb   A     EDO1,2-ETHANEDIOL F - 357
1l0s_A_281l0s   A     TYI3,5-DIIODOTYROSINE D - 28
1l0s_A_281l0s   A     CDCADMIUM ION D - 28
1l0s_A_281l0s   A     TYI3,5-DIIODOTYROSINE C - 37
1lvl_*_2281lvl   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE H - 233
1lvl_*_2281lvl   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE S - 234
1lvl_*_2281lvl   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 235
1odo_A_3081odo   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 317
1ofm_A_1611ofm   A     GCUD-GLUCURONIC ACID R - 161
1ofm_A_1611ofm   A     GCUD-GLUCURONIC ACID H - 164
1ofm_A_1991ofm   A     MANALPHA-D-MANNOSE R - 199
1ofm_A_1991ofm   A     GCUD-GLUCURONIC ACID R - 199
1ofm_A_1991ofm   A     MANALPHA-D-MANNOSE D - 201
1ofm_A_1991ofm   A     GCUD-GLUCURONIC ACID D - 201
1ofm_A_1991ofm   A     MANALPHA-D-MANNOSE H - 202
1ofm_A_1991ofm   A     GCUD-GLUCURONIC ACID H - 202
1ofm_A_2311ofm   A     MANALPHA-D-MANNOSE D - 233
1ofm_A_2311ofm   A     GCUD-GLUCURONIC ACID D - 233
1ofm_A_2311ofm   A     MANALPHA-D-MANNOSE S - 234
1ofm_A_2311ofm   A     RAMRHAMNOSE S - 234
1ofm_A_2311ofm   A     GCUD-GLUCURONIC ACID S - 234
1ofm_A_2551ofm   A     MANALPHA-D-MANNOSE Y - 257
1ofm_A_2551ofm   A     RAMRHAMNOSE Y - 257
1ofm_A_2551ofm   A     GCUD-GLUCURONIC ACID Y - 257
1ofm_A_2551ofm   A     MANALPHA-D-MANNOSE G - 258
1ofm_A_2551ofm   A     RAMRHAMNOSE G - 258
1ofm_A_2551ofm   A     RAMRHAMNOSE N - 259
1ofm_A_2551ofm   A     RAMRHAMNOSE T - 260
1ofm_A_2771ofm   A     RAMRHAMNOSE N - 280
1ofm_A_2771ofm   A     RAMRHAMNOSE F - 282
1pn2_A_1231pn2   A     MSESELENOMETHIONINE R - 134
1ps9_A_5891ps9   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Y - 596
1qre_A_511qre   A     BCTBICARBONATE ION R - 59
1qre_A_511qre   A     OCNCOBALT ION, 2 WATERS COORDINATED R - 59
1qre_A_731qre   A     BCTBICARBONATE ION H - 81
1qre_A_731qre   A     OCNCOBALT ION, 2 WATERS COORDINATED H - 81
1qre_A_731qre   A     BCTBICARBONATE ION A - 82
1qre_A_731qre   A     OCNCOBALT ION, 2 WATERS COORDINATED A - 82
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1f0l_A_121f0l   A CATREFERS TO CATALYTIC SITEH - 21
1h2k_A_1861h2k   A SO2SO4 BINDING SITE FOR CHAIN AE - 192
1h2k_A_1861h2k   A SO2SO4 BINDING SITE FOR CHAIN AG - 193
1h2k_A_1861h2k   A FE1FE BINDING SITE FOR CHAIN AH - 199
1ofm_A_1991ofm   A AC3GCU BINDING SITE FOR CHAIN AR - 199
1ofm_A_1991ofm   A AC1MAN BINDING SITE FOR CHAIN AH - 202
1ofm_A_2311ofm   A AC1MAN BINDING SITE FOR CHAIN AD - 233
1ofm_A_2311ofm   A AC1MAN BINDING SITE FOR CHAIN AS - 234
1ofm_A_2551ofm   A AC1MAN BINDING SITE FOR CHAIN AY - 257
1ofm_A_2551ofm   A AC2RAM BINDING SITE FOR CHAIN AG - 258
1ofm_A_2771ofm   A AC2RAM BINDING SITE FOR CHAIN AN - 280
1ofm_A_2771ofm   A AC2RAM BINDING SITE FOR CHAIN AF - 282

Clusters included in this Subclass
CLUSTER: AR.1.16
CLUSTER: AR.1.2
CLUSTER: AR.1.46
CLUSTER: AR.2.2
CLUSTER: AR.2.26
CLUSTER: AR.2.35
CLUSTER: AR.3.14
CLUSTER: AR.3.182
CLUSTER: AR.3.2
CLUSTER: AR.4.142
CLUSTER: AR.4.97