ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.1.6

Subclass Accession number: 1640
Subclass: 2.1.6

PSSM

Type: AR beta-beta link
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Conserved Annotation
SCOP : 56234 (>75 %) 56235 (>75 %) 56251 (>75 %)

Number of loops: 7

Average sequence ID (%) : 11.3 +/- 15.6
Average RMSD (Å) : 0.800 +/- 0.115

Consensus geometry

d (Å): 13

delta (°): 0-45

theta (°): 0-45

rho (°): 180-225

Consensus Sequence:	XhXXXX
(φψ)-conformation:	bbpabb

Pattern:	[agkqs]	[AFGLVY]	x	[GNPST]	[CQRW]	[asv]	x	[agilv]
Conservation:	-0.814	-1.258	0.847	1.093	1.099	0.607	-0.672	-0.903

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1btk_A_141	1btk	A	141	148	KYHPCFWI	EE-SS-EE	bbbabxxb
1d8c_A_326	1d8c	A	328	335	SLHGRSLL	EE--S-EE	bbpabxxx
1g0u_H_11	1g0u	H	15	22	AADTRSTQ	EE---EEE	bbxabbbx
1g0u_K_11	1g0u	K	15	22	AVDSRATA	EE---EEE	bbxabbbb
1g3k_A_11	1g3k	A	15	22	GGDGQVSL	EE---EEE	bbxaxbbb
1mve_A_159	1mve	A	161	168	QFINWVKV	EE---EEE	bbbabbbb
1uun_A_59	1uun	A	68	75	IGFPWSLG	EE-SEEEE	bbbabxbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1btk_A_141	1btk	A	ZNZINC ION	Y - 142
1btk_A_141	1btk	A	ZNZINC ION	H - 143
1btk_A_141	1btk	A	ZNZINC ION	P - 144
1btk_A_141	1btk	A	ZNZINC ION	C - 145
1d8c_A_326	1d8c	A	MSESELENOMETHIONINE	L - 335
1d8c_A_326	1d8c	A	MSESELENOMETHIONINE	I - 337
1d8c_A_326	1d8c	A	MSESELENOMETHIONINE	R - 338
1d8c_A_326	1d8c	A	MGMAGNESIUM ION	R - 338
1d8c_A_326	1d8c	A	GLVGLYOXYLIC ACID	R - 338
1g0u_H_11	1g0u	H	MGMAGNESIUM ION	R - 19
1g0u_H_11	1g0u	H	MGMAGNESIUM ION	Q - 22
1mve_A_159	1mve	A	MSESELENOMETHIONINE	F - 160
1mve_A_159	1mve	A	CACALCIUM ION	F - 160
1mve_A_159	1mve	A	MSESELENOMETHIONINE	Q - 161
1mve_A_159	1mve	A	CACALCIUM ION	Q - 161
1mve_A_159	1mve	A	MSESELENOMETHIONINE	F - 162
1mve_A_159	1mve	A	CACALCIUM ION	F - 162
1mve_A_159	1mve	A	MSESELENOMETHIONINE	I - 163
1mve_A_159	1mve	A	CACALCIUM ION	I - 163
1mve_A_159	1mve	A	MSESELENOMETHIONINE	N - 164
1mve_A_159	1mve	A	CACALCIUM ION	N - 164
1mve_A_159	1mve	A	MSESELENOMETHIONINE	W - 165
1mve_A_159	1mve	A	CACALCIUM ION	W - 165

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1btk_A_141	1btk	A	ZN1ZN BINDING SITE IN THE BTK MOTIF, CHAIN A.	H - 143

Clusters included in this Subclass

CLUSTER: AR.2.61

CLUSTER: AR.4.58