Logo
Information on SUBCLASS 3.2.1
Subclass Accession number: 1687
Subclass: 3.2.1 PSSM
Type: AR beta-beta link
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 43

Average sequence ID (%) : 7.8 +/- 11.7
Average RMSD (Å) : 0.833 +/- 0.236

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 45-90 rho (°): 90-135
Consensus Sequence: XXXXXhX
(φψ)-conformation: bbabpbb
Pattern: xxxx[adegknqrst]x[afilmpvy]xx
Conservation:-0.710-0.5470.282-0.3811.282-1.1151.685-0.496-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8i_*_811a8i   -8492YLSLEFYMGEE-S-EEEEbxbabbxae
1auk_*_3251auk   -325332GVTHELAS.EEE-S-EE.ebbaxxbb.
1dhk_B_391dhk   B4350AFYSAPIQ.EEESS-EE.bbxaxxbx.
1dj7_B_61dj7   B715VRVTSSVVVEEE-S--EEbbxaxxbxb
1ee6_A_31ee6   A311TVVHETIRVEEESS-EEEbxxabpxxb
1eg7_A_15101eg7   A15111519ITVREVRLSEEE---EEEbbxabbbbb
1ew2_A_4321ew2   A432439.HAGEDVAV.EE-S-EEE.xbaxpbxb
1fsu_*_3421fsu   -342349VKNRELIH.EEE-S-EE.bbxaxxbb.
1g24_A_1661g24   A167175RLEYGYISTEEESS-EEEbbbaxxbxb
1gzc_A_481gzc   A5158TLYTKPVH.EEESS-EE.bbxabxbx.
1h6l_A_3311h6l   A334341AQNGENID.EEESS-EE.bxbabxbb.
1hdh_A_4001hdh   A400406.ISHAFAT..EE---EE..bbaxxbb.
1hw6_A_131hw6   A1320SIPQLGYG.EEESB-EE.bbxabbxx.
1hxr_A_371hxr   A3745LFSRRQLFLEEE---EEEbxbaxxbxb
1ia9_A_15981ia9   A15991607SWSQLGLCAEE-SS-EEEbxxaxxbxb
1ih7_A_4021ih7   A402410NRYKYVMSFEE-SSEEEEexbabbbbb
1j79_A_3111j79   A313320ELVREEQQ.EEE---EE.bbbabpbb.
1jd0_A_2071jd0   A210218TVFRNPVQIEEESS-EEEbbxaxxbbb
1jmj_A_4481jmj   A450458FTVDRPFLFEE--S-EEEbbxabwbbb
1k5c_A_421k5c   A4351VTMAGDITFEEE-S-EEEbbxabxbbb
1kop_A_1831kop   A188196LVLKTYDHIEEESS-EEEbbxaxxbbb
1kqf_A_7001kqf   A700706.YALEDLY..EESS-EE..bxabxbb.
1lfp_A_1961lfp   A201208WKPISTVQ.EEESS-EE.bbxabbbx.
1mwp_A_1031mwp   A104112QCKTHPHFVEEE---EEElxxaxwbbb
1mwp_A_821mwp   A8694VEANQPVTIEE-SS-EEEbxxabxbxb
1n67_A_4821n67   A482489.QITTPYIV.EE-S-EEE.bbabxbbb
1nls_*_1701nls   -173180ALFYAPVH.EEESS-EE.bbxaxxbx.
1o9w_A_531o9w   A5866GKVDLPVVGEEE-S-EEEbbbaxxxae
1onc_*_551onc   -5765VLTTSEFYLEE-SS-EEEbxpaxxbxb
1p42_A_31p42   A513KTVKEKLSFEEESS-EEEbbbabpbgb
1pl3_A_941pl3   A94102TAYTGTATLEE--SS-EEbpxaxbbbx
1qvc_A_81qvc   A1220GNLGQDPEVEEESS--EEbbxabxpxx
1rmg_*_591rmg   -6068YALNTWVTLEEE-S-EEEbbbabxbbb
1rwr_A_1661rwr   A167174VKLQGAVS.EEE-S-EE.bbbabxbb.
1rwr_A_2401rwr   A241249VRQLGSLSSEEE-S-EEEbbbaxxbbb
1tul_*_241tul   -2735FIIEDEYYLEEE-S-EEEbxxabpbbb
1tyv_*_1431tyv   -144151LLIDRDYN.EEE-S-EE.bbxabpbx.
1ue1_A_61ue1   A1119GNLTADPELEEESS--EEbbxabpxxb
1ug6_A_2781ug6   A281289VNYYAPVRVEEES--EEEbbbabxbbb
2sli_*_5002sli   -501509KAFPTNYLAEE-SS-EEEbxxabxbbb
2tgi_*_952tgi   -104111MIVKSCKC.EEE--EEE.abxabbbb.
3tss_*_613tss   -6674TKRIKKSQHEEESS--EEbbxabxxbx
3ull_A_173ull   A2129GRVGQDPVLEEE-S--EEbbxabxpbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a8i_*_811a8i   *     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) Y - 90
1ew2_A_4321ew2   A     ZNZINC ION H - 432
1ew2_A_4321ew2   A     PO4PHOSPHATE ION H - 432
1h6l_A_3311h6l   A     CACALCIUM ION Q - 335
1h6l_A_3311h6l   A     CACALCIUM ION N - 336
1h6l_A_3311h6l   A     CACALCIUM ION G - 337
1h6l_A_3311h6l   A     CACALCIUM ION E - 338
1h6l_A_3311h6l   A     CACALCIUM ION N - 339
1h6l_A_3311h6l   A     CACALCIUM ION I - 340
1h6l_A_3311h6l   A     CACALCIUM ION D - 341
1ia9_A_15981ia9   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE K - 1608
1jd0_A_2071jd0   A     AZM5-ACETAMIDO-1,3,4-THIADIAZOLE-2-SULFONAMIDE V - 207
1jd0_A_2071jd0   A     ZNZINC ION W - 209
1jd0_A_2071jd0   A     AZM5-ACETAMIDO-1,3,4-THIADIAZOLE-2-SULFONAMIDE W - 209
1kop_A_1831kop   A     ZNZINC ION W - 187
1kop_A_1831kop   A     AZIAZIDE ION W - 187
1lfp_A_1961lfp   A     MSESELENOMETHIONINE W - 201
1lfp_A_1961lfp   A     MSESELENOMETHIONINE K - 202
1lfp_A_1961lfp   A     MSESELENOMETHIONINE P - 203
1p42_A_31p42   A     ZNZINC ION L - 3
1rmg_*_591rmg   *     NAGN-ACETYL-D-GLUCOSAMINE N - 59
1ug6_A_2781ug6   A     GOLGLYCEROL N - 282
1ug6_A_2781ug6   A     GOLGLYCEROL Y - 284
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h6l_A_3311h6l   A AC2STRUCTURAL CA 402 BINDING SITE FOR CHAIN AN - 336
1h6l_A_3311h6l   A AC2STRUCTURAL CA 402 BINDING SITE FOR CHAIN AE - 338
1h6l_A_3311h6l   A AC1STRUCTURAL CA 401 BINDING SITE FOR CHAIN AN - 339
1h6l_A_3311h6l   A AC1STRUCTURAL CA 401 BINDING SITE FOR CHAIN AI - 340
1h6l_A_3311h6l   A AC1STRUCTURAL CA 401 BINDING SITE FOR CHAIN AD - 341

Clusters included in this Subclass
CLUSTER: AR.2.15
CLUSTER: AR.3.13
CLUSTER: AR.4.11
CLUSTER: AR.4.22
CLUSTER: AR.5.108