Logo
Information on SUBCLASS 2.7.2
Subclass Accession number: 169
Subclass: 2.7.2 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 15.9 +/- 16.4
Average RMSD (Å) : 0.471 +/- 0.198

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 45-90
Consensus Sequence: XXXGpX
(φψ)-conformation: aaplbp
Pattern: x[aiklt][agkqs]x[FILV][ehkrt][ADEKR]x[LTY][eflm][DG][ehkt][deprt][ILMV]x
Conservation:-0.534-0.626-0.473-0.7840.935-0.3910.278-0.6330.213-0.4932.784-0.108-0.7051.338-0.802
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1c7q_A_1171c7q   A119133YISHLLDVLEGKDLSHHHHHHHHHTT--EEaaaaaaaaaxvbxbb
1df7_A_251df7   A2741DQAHFREITMGHTIVHHHHHHHHHTTSEEEaaaaaaaaapvbxbb
1fsg_A_491fsg   A5973LAYDIHRTYFGEELHHHHHHHHHHTTS-EEaaaaaaaaapvxxbb
1i8t_A_1941i8t   A194208YTKLIEKMLEGVDVKHHHHHHHHHTTSEEEaaaaaaaaapvbxbb
1juv_A_341juv   A3650DLQNFKARTEGTIMIHHHHHHHHHTTSEEEaaaaaaaaapvbxxb
1os1_A_991os1   A105119LKGLVTRQLSGKRLFHHHHHHHHHTTSEEEaaaaaaaaaxvbxbb
1ra9_*_251ra9   -2741DLAWFKRNTLDKPVIHHHHHHHHHTTS-EEaaaaaaaaaplbxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1df7_A_251df7   A     MTXMETHOTREXATE P - 25
1df7_A_251df7   A     GOLGLYCEROL P - 25
1df7_A_251df7   A     MTXMETHOTREXATE E - 26
1df7_A_251df7   A     GOLGLYCEROL E - 26
1df7_A_251df7   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE D - 27
1df7_A_251df7   A     MTXMETHOTREXATE D - 27
1df7_A_251df7   A     GOLGLYCEROL D - 27
1df7_A_251df7   A     MTXMETHOTREXATE Q - 28
1df7_A_251df7   A     GOLGLYCEROL Q - 28
1df7_A_251df7   A     MTXMETHOTREXATE A - 29
1df7_A_251df7   A     GOLGLYCEROL A - 29
1df7_A_251df7   A     MTXMETHOTREXATE H - 30
1df7_A_251df7   A     GOLGLYCEROL H - 30
1df7_A_251df7   A     MTXMETHOTREXATE F - 31
1df7_A_251df7   A     MTXMETHOTREXATE R - 32
1df7_A_251df7   A     GOLGLYCEROL E - 33
1df7_A_251df7   A     MTXMETHOTREXATE T - 35
1df7_A_251df7   A     MTXMETHOTREXATE M - 36
1df7_A_251df7   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE M - 42
1df7_A_251df7   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 43
1fsg_A_491fsg   A     MO2MAGNESIUM ION, 2 WATERS COORDINATED I - 77
1fsg_A_491fsg   A     PRPALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID I - 77
1fsg_A_491fsg   A     MO2MAGNESIUM ION, 2 WATERS COORDINATED L - 78
1fsg_A_491fsg   A     PRPALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID L - 78
1juv_A_341juv   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE F - 40
1juv_A_341juv   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE M - 51
1juv_A_341juv   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 52
1ra9_*_251ra9   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE M - 42
1ra9_*_251ra9   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 43

Clusters included in this Subclass
CLUSTER: HE.2.61
CLUSTER: HE.3.137
CLUSTER: HE.3.73
CLUSTER: HE.5.178