ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 4.4.1

Subclass Accession number: 172
Subclass: 4.4.1
Type: HH alpha-alpha
DB: ArchDB-KI

Number of loops: 5

Average sequence ID (%) : 49.4 +/- 11.1
Average RMSD (Å) : 0.85 +/- 0.49

Consensus geometry

d (Å): 15

delta (°): 90-135

theta (°): 135-180

rho (°): 180-225

Consensus Sequence:	phXphppX
(φψ)-conformation:	aaGbppaa

Pattern:	[FL]	[NSY]	[HKN]	[IL]	x	[KR]	[CIT]	x	[HKR]	[FL]	{ST}	[DEN]	[DP]	[H]	[AIV]	{QR}	[FY]	[FLY]	[AIL]	[AY]	[Q]	[I]	[LV]	x	x	[FL]	[EK]	[Y]	[IL]	[H]	[S]
Conservation:	-0.294	-0.924	-0.442	0.068	-1.283	0.311	-0.870	-0.632	-0.388	-0.294	-0.500	-0.215	-0.100	2.684	-0.635	-1.040	0.958	-0.323	-0.870	-0.458	1.088	0.556	-0.221	-0.818	-0.545	-0.294	0.052	2.152	0.038	2.684	0.556

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1apm_E_128	1apm	E	129	159	FSHLRRIGRFAEPHARFYAAQIVLTFEYLHS	HHHHHHH----HHHHHHHHHHHHHHHHHHHH	aaaaaaagbxxaaaaaaaaaaaaaaaaaaaa
1cdk_A_128	1cdk	A	129	159	FSHLRRIGRFSEPHARFYAAQIVLTFEYLHS	HHHHHHH-S--HHHHHHHHHHHHHHHHHHHH	aaaaaaaGbxxaaaaaaaaaaaaaaaaaaaa
1p38_*_113	1p38	-	113	143	LNNIVKCQKLTDDHVQFLIYQILRGLKYIHS	HHHHHHH----HHHHHHHHHHHHHHHHHHHH	aaaaaaaexbxaaaaaaaaaaaaaaaaaaaa
1pme_*_112	1pme	-	112	142	LYKLLKTQHLSNDHICYFLYQILRGLKYIHS	HHHHHHH----HHHHHHHHHHHHHHHHHHHH	aaaaaaabxxxaaaaaaaaaaaaaaaaaaaa
1ydr_E_128	1ydr	E	129	159	FSHLRRIGRFSEPHARFYAAQIVLTFEYLHS	HHHHHHH----HHHHHHHHHHHHHHHHHHHH	aaaaaaaGbbxaaaaaaaaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Clusters included in this Subclass