ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 3.4.8

Subclass Accession number: 1721
Subclass: 3.4.8

Type: AR beta-beta link
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : - (>75 %)  2 (>75 %)  3 (>75 %)
GO : GO:0016798 (>75 %)  GO:0016799 (>75 %)  GO:0019104 (>75 %)
SCOP : 52140 (>75 %)  52141 (>75 %)  52142 (>75 %)

Number of loops: 3

Average sequence ID (%) : 16.7 +/- 19.2
Average RMSD (Å) : 0.933 +/- 0.404

Consensus geometry

d (Å): 13

delta (°): 0-45

theta (°): 45-90

rho (°): 90-135

Consensus Sequence:	hpXpchX
(φψ)-conformation:	bbaaabb

Pattern:	x	[PY]	x	[ILV]	[DNT]	x	[DKR]	[DN]	[IL]	[KV]
Conservation:	-1.000	0.400	-0.912	0.610	-0.049	-1.839	-0.332	1.458	0.963	-0.298

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1g38_A_289	1g38	A	290	299	VPVLTGRNLK	EE-B-GGGEE	bxxxbaaaxb
1o5o_A_61	1o5o	A	64	73	GYRINDKDIV	EEE--STTEE	bbbbxaaaxb
1q3q_A_193	1q3q	A	193	201	.YVVDLDNIK	.EE--GGGEE	.xbbbaaabx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1o5o_A_61	1o5o	A	U5PURIDINE-5'-MONOPHOSPHATE	L - 78

Clusters included in this Subclass

CLUSTER: AR.5.194