ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 3.6.1

Subclass Accession number: 1730
Subclass: 3.6.1

Type: AR beta-beta link
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Number of loops: 41

Average sequence ID (%) : 14.3 +/- 15.9
Average RMSD (Å) : 0.456 +/- 0.148

Consensus geometry

d (Å): 7

delta (°): 45-90

theta (°): 135-180

rho (°): 45-90

Consensus Sequence:	XhXXhXX
(φψ)-conformation:	bbppgbb

Pattern:	[afgilmvy]	x	[acfilv]	[adeknqrs]	x	[gnqs]	x	x	x	x
Conservation:	0.607	-0.866	2.053	-0.225	0.130	1.193	-0.759	-0.472	-0.807	-0.853

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a34_A_37	1a34	A	45	54	VSVQSGIAFK	EE--TT--EE	bxbbxvbxbx
1aoz_A_254	1aoz	A	254	263	IDIYSGESYS	EEE-TT-EEE	bxbbpgxbbb
1e43_A_467	1e43	A	470	479	FHVNGGSVSI	EEE-TT-EEE	xbbxxlbbbb
1ee6_A_44	1ee6	A	44	53	FRLEAGASLK	EEE-TTEEEE	bbbxxvxbbb
1fi2_A_73	1fi2	A	77	86	VDFAPGGTNP	EEE-TT-EEE	bbbxpvxbxx
1g40_A_155	1g40	A	155	164	YSCNSGYSLI	EEE-TT-EEE	bbbxxgbbxb
1g5a_A_615	1g5a	A	615	624	LTLQPYQVMW	EEE-TT-EEE	bbxxpvxbbb
1gjw_A_618	1gjw	A	624	633	VVLKPLEFAL	EEE-TT-EEE	bbxxxvbbbb
1gw0_A_265	1gw0	A	265	274	LFLAVGQRYD	EEE-TT-EEE	bxbxpvxbbx
1h03_P_92	1h03	P	95	104	YACNKGFTMI	EEE-TT-EEE	bbxxpvbbxb
1h54_A_243	1h54	A	246	255	GKLAPQASAE	EEE-TT-EEE	ebbxpvxbbb
1hfu_A_186	1hfu	A	187	196	VNVEQGKKYR	EEE-TT-EEE	bxbbpvxbbx
1hfu_A_235	1hfu	A	235	244	LQIFTGQRYS	EEE-TT-EEE	bbbxpvxbbx
1hx6_A_153	1hx6	A	153	161	.TIAAGATGE	.EE-TT-EEE	.bbxpvxbbb
1iby_A_39	1iby	A	40	49	LVVKKGDAVK	EEEETT-EEE	bbbbpvxxbb
1iby_A_69	1iby	A	71	80	EVIKAGETKT	EEE-TT-EEE	bbbxpvbbbx
1j0m_A_740	1j0m	A	741	750	YSADPGITVT	EEE-TTEEEE	bbbxxgbbxa
1j1l_A_169	1j1l	A	174	183	FKLDPGAKHS	EEE-TT-EEE	bbbxpvxbbb
1ji2_A_568	1ji2	A	571	580	LTLRPYQGMI	EEE-TT-EEE	bbbxplxbbb
1jmm_A_594	1jmm	A	598	607	VLLERGQSAT	EEE-TT-EEE	bbbbpgxbbb
1jmx_A_293	1jmx	A	293	301	.FIKAGGESE	.EEETT-EEE	.bbxxvbbbx
1kbv_A_72	1kbv	A	72	81	IRVREGDTVE	EEEETT-EEE	bbbbpgxbbx
1ktb_A_369	1ktb	A	372	381	VIINPSGVVM	EEE-TT-EEE	bbbxpUbbbb
1kv7_A_273	1kv7	A	273	282	LPVLMGERFE	EEE-TT-EEE	bpbxxvxbbb
1l4i_A_165	1l4i	A	165	174	TMVPPQGKVT	EEE-TT-EEE	bbbxpvbbbb
1lk9_A_40	1lk9	A	40	46	.ECNTCYT..	.EE-TTEE..	.bxxpvbb..
1m53_A_584	1m53	A	585	594	LSLSPWQAGV	EEE-TT-EEE	bxxxplxbbb
1m56_B_198	1m56	B	198	207	MVVPVNKTVV	EEEETT-EEE	xxbxpvbxbb
1nbc_A_100	1nbc	A	100	108	.TLEPGAHVQ	.EE-TT-EEE	.bbxpvxbbb
1o6u_A_280	1o6u	A	282	291	VQISRGSSHQ	EEE-TT-EEE	bbbxpvbbbb
1od5_A_368	1od5	A	372	381	VVLYRNGIYS	EEE-TT-EEE	bbbxpvxbxp
1od5_A_421	1od5	A	422	431	LVVPQNFVVA	EEE-TT-EEE	bxbxpvxxbb
1oe1_A_227	1oe1	A	227	236	LTAKVGETVL	EEEETT-EEE	xbbbpvxbbb
1oe1_A_67	1oe1	A	67	76	LVVHEGDYVQ	EEEETT-EEE	bbbbpvxbxb
1ofn_A_48	1ofn	A	52	61	SMSKRGVVRG	EEE-TTBEEE	bbbxpvxbbe
1ok3_A_28	1ok3	A	31	39	YKCEESFVK.	EEE-TT-EE.	bbxxpvbbx.
1r75_A_92	1r75	A	97	106	VDVRPLETQM	EEE-TT-EEE	bbbxpvxbbx
1six_A_35	1six	A	35	44	VELAPGRRAL	EEE-TT-EEE	bbbxpvxbbb
1uas_A_344	1uas	A	347	356	ASVAPHDCKM	EEE-TT-EEE	bxbxpvxbbb
1uok_*_544	1uok	-	545	554	ITLRPYEAMV	EEE-TT-EEE	bxxxpUxbbb
4ubp_B_74	4ubp	B	75	84	ARFEPGEEME	EEE-TT-EEE	bbbxpvxbbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1aoz_A_254	1aoz	A	CUCOPPER (II) ION	G - 259
1aoz_A_254	1aoz	A	C2OCU-O-CU LINKAGE	G - 259
1e43_A_467	1e43	A	CACALCIUM ION	Q - 482
1fi2_A_73	1fi2	A	MNMANGANESE (II) ION	N - 85
1fi2_A_73	1fi2	A	MNMANGANESE (II) ION	H - 88
1gw0_A_265	1gw0	A	CUCOPPER (II) ION	G - 270
1hfu_A_235	1hfu	A	CUCOPPER (II) ION	G - 240
1hx6_A_153	1hx6	A	MPD2-METHYL-2,4-PENTANEDIOL	W - 167
1jmm_A_594	1jmm	A	MSESELENOMETHIONINE	G - 596
1jmm_A_594	1jmm	A	MSESELENOMETHIONINE	S - 597
1ktb_A_369	1ktb	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 369
1ktb_A_369	1ktb	A	CRYPROPANE-1,2,3-TRIOL	N - 369
1ktb_A_369	1ktb	A	CRYPROPANE-1,2,3-TRIOL	F - 370
1ktb_A_369	1ktb	A	CRYPROPANE-1,2,3-TRIOL	T - 371
1ktb_A_369	1ktb	A	CRYPROPANE-1,2,3-TRIOL	V - 372
1ktb_A_369	1ktb	A	CRYPROPANE-1,2,3-TRIOL	I - 373
1ktb_A_369	1ktb	A	CRYPROPANE-1,2,3-TRIOL	V - 380
1ktb_A_369	1ktb	A	CRYPROPANE-1,2,3-TRIOL	M - 381
1ktb_A_369	1ktb	A	CRYPROPANE-1,2,3-TRIOL	W - 382
1ktb_A_369	1ktb	A	CRYPROPANE-1,2,3-TRIOL	Y - 383
1ktb_A_369	1ktb	A	CRYPROPANE-1,2,3-TRIOL	L - 384
1ktb_A_369	1ktb	A	CRYPROPANE-1,2,3-TRIOL	C - 385
1ktb_A_369	1ktb	A	CRYPROPANE-1,2,3-TRIOL	P - 386
1kv7_A_273	1kv7	A	CUCOPPER (II) ION	G - 278
1kv7_A_273	1kv7	A	C2OCU-O-CU LINKAGE	G - 278
1o6u_A_280	1o6u	A	MSESELENOMETHIONINE	Q - 291
1od5_A_368	1od5	A	MGMAGNESIUM ION	Q - 370
1od5_A_368	1od5	A	MGMAGNESIUM ION	V - 372
1od5_A_368	1od5	A	MGMAGNESIUM ION	Y - 380
1od5_A_368	1od5	A	MGMAGNESIUM ION	H - 383
1od5_A_368	1od5	A	MGMAGNESIUM ION	N - 385
1od5_A_421	1od5	A	MGMAGNESIUM ION	V - 430
1od5_A_421	1od5	A	MGMAGNESIUM ION	E - 432
1od5_A_421	1od5	A	MGMAGNESIUM ION	Y - 441
1od5_A_421	1od5	A	MGMAGNESIUM ION	V - 443
1od5_A_421	1od5	A	MGMAGNESIUM ION	K - 445
1oe1_A_67	1oe1	A	PCAPYROGLUTAMIC ACID	Y - 74
1ofn_A_48	1ofn	A	GOLGLYCEROL	T - 49
1ofn_A_48	1ofn	A	GOLGLYCEROL	I - 50
1ofn_A_48	1ofn	A	GOLGLYCEROL	H - 51
1uas_A_344	1uas	A	GOLGLYCEROL	P - 351
1uas_A_344	1uas	A	GOLGLYCEROL	H - 352

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1od5_A_368	1od5	A	AC4MG BINDING SITE FOR CHAIN B	H - 383
1od5_A_421	1od5	A	AC4MG BINDING SITE FOR CHAIN B	E - 432
1od5_A_421	1od5	A	AC4MG BINDING SITE FOR CHAIN B	Y - 441

Clusters included in this Subclass