ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.6.2

Subclass Accession number: 1731
Subclass: 3.6.2

PSSM

Type: AR beta-beta link
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Conserved Annotation
EC : 3.2 (>50 %)  3.2.1 (>50 %)  3.2.1.21
GO : GO:0004553 (>50 %)  GO:0015926 (>50 %)  GO:0016798 (>50 %)
SCOP : 51350 (>50 %)  51445 (>50 %)  51521 (>50 %)

Number of loops: 23

Average sequence ID (%) : 14.0 +/- 15.4
Average RMSD (Å) : 0.735 +/- 0.244

Consensus geometry

d (Å): 11

delta (°): 0-45

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	XhXXGXX
(φψ)-conformation:	bbppgbb

Pattern:	x	[ciltvwy]	x	[ACFILMV]	x	[adegps]	[dgn]	x	x	[afgilmpvy]	x
Conservation:	-1.000	-0.296	-0.346	0.574	-0.415	-0.339	2.488	-0.584	-0.716	-0.365	-1.000

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ayo_A_44	1ayo	A	47	56	DVKMVSGFIP.	EEE--TTEEE.	bbxxxpvbbx.
1b12_A_260	1b12	A	260	270	TWIVPPGQYFM	EEE--TTEEEE	bbbxxpvbbbb
1chd_*_224	1chd	-	225	235	AYIAPGDKHME	EEE--TTSEEE	bbbpxxvbxbb
1ci9_A_239	1ci9	A	239	248	.VRMRDGIEVP	.EE--TTEEEE	.bxxbxvxbbp
1dx5_I_368	1dx5	I	369	379	LCVCAEGFAPI	EEE--TTEEEE	bxbbxxvbbpx
1dx5_I_407	1dx5	I	407	416	.CECPEGYILD	.EE--TTEEEE	.bbbxpvbbxb
1ef8_A_50	1ef8	A	52	62	ILRAPSGSKVF	EEE--TT-SEE	bbbbppvpaba
1fjs_L_106	1fjs	L	108	117	VCSCARGYTL.	EEE--TTEEE.	bbbbxxgbbx.
1h6f_A_220	1h6f	A	220	229	.TILNSMHKYQ	.EE--TTEEEE	.xxbxxvbbbb
1h80_A_97	1h80	A	97	106	.IQMKSNVHIR	.EE--TTEEEE	.xbxbplbbxb
1iv8_A_685	1iv8	A	686	696	KLKLEEGAIYT	EEE--SS-EEE	bbxxxxgpbbb
1jgt_A_185	1jgt	A	185	194	.YQVPAGAVMD	.EE--TTEEEE	.bbxpxlbbxb
1jr7_A_273	1jr7	A	274	284	SVPVPVGKFLL	EE---TT-EEE	bbwbxpvbbxb
1kli_L_109	1kli	L	111	120	SCRCHEGYSL.	EEE--TTEEE.	bxbbxpvbbx.
1l5p_A_10	1l5p	A	13	21	QLKFEDDQT..	EEE--TTEE..	xbxbbpvxx..
1lml_*_533	1lml	-	533	542	.TNCTPGLRVE	.EE--TT-EEE	.bpbxpgxbbx
1nps_A_40	1nps	A	40	50	SVKVPPGVKAI	EEE--TTEEEE	bbbbxpvbbbb
1q15_A_177	1q15	A	177	187	AQRLKPGAVHV	EEE--SSEEEE	bbxxpxvbbbb
1qiu_A_333	1qiu	A	335	344	AINAGKGLEF.	EE---TTEEE.	bxxxbxvbbb.
1qiu_A_357	1qiu	A	358	367	KTKIGSGIDY.	EE---TTEEE.	bxxbbpvbbb.
1qiu_A_373	1qiu	A	374	384	ITKLGAGLSFD	EE---TTEEEE	bxxxbxvbbxx
1six_A_49	1six	A	50	60	AVAVPFGMVGL	EEE--TTEEEE	bbbxxpvbbxb
1sml_A_137	1sml	A	137	146	.RIVMDGEVIT	.EE--TT-EEE	.bxbbpvxbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1dx5_I_368	1dx5	I	FMTFORMIC ACID	A - 373
1dx5_I_368	1dx5	I	FMTFORMIC ACID	F - 376
1dx5_I_407	1dx5	I	CACALCIUM ION	G - 412
1fjs_L_106	1fjs	L	GOLGLYCEROL	C - 111
1fjs_L_106	1fjs	L	GOLGLYCEROL	A - 112
1fjs_L_106	1fjs	L	GOLGLYCEROL	R - 113
1fjs_L_106	1fjs	L	GOLGLYCEROL	Y - 115
1nps_A_40	1nps	A	CACALCIUM ION	Y - 52
1nps_A_40	1nps	A	CACALCIUM ION	Q - 53
1nps_A_40	1nps	A	CACALCIUM ION	N - 54

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1lml_*_533	1lml	*	CA3CARBOHYDRATE BINDING SITE.	N - 534

Clusters included in this Subclass

CLUSTER: AR.3.110

CLUSTER: AR.3.62

CLUSTER: AR.4.37

CLUSTER: AR.4.60

CLUSTER: AR.5.129

CLUSTER: AR.5.198

CLUSTER: AR.5.37