ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 3.8.1

Subclass Accession number: 1739
Subclass: 3.8.1

Type: AR beta-beta link
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Number of loops: 38

Average sequence ID (%) : 12.8 +/- 15.4
Average RMSD (Å) : 0.644 +/- 0.301

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 135-180

rho (°): 225-270

Consensus Sequence:	XpXXXpX
(φψ)-conformation:	bbapabb

Pattern:	[afgiklmtv]	x	[agnstv]	x	[adegknqrst]	[adegnpqst]	[dehknrsty]	x	x	x
Conservation:	0.192	-1.009	2.536	-0.693	0.395	0.288	-0.376	-0.620	-0.277	-0.436

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ahs_A_231	1ahs	A	233	242	VGNPGARRSI	EEE-SSS-EE	bbbaxabxbb
1bag_*_370	1bag	-	373	382	LANAGSSSVS	EEE-SSS-EE	bbbaxabxbx
1bf2_*_681	1bf2	-	684	693	AYNGWSSSVT	EEE-SSS-EE	bbxaxabpbx
1euc_B_258	1euc	B	260	269	IGLDGNIACF	EE-S-SEEEE	bxbaxabxbb
1euw_A_96	1euw	A	101	110	VWNRGQDSFT	EEE-SSS-EE	bbxababpbb
1ex0_A_533	1ex0	A	539	548	FRNNSHNRYT	EEE-SSS-EE	bbxaxabxbb
1f42_A_267	1f42	A	267	276	VFTDKTSATV	EEESSSEEEE	bbbaxabbbb
1f7d_A_79	1f7d	A	82	91	MINVSRKSIT	EEE-SSS-EE	bbxaxabpbb
1fi2_A_137	1fi2	A	139	148	QFNVGKTEAY	EEE-SSS-EE	bbxaxabxbb
1g5a_A_575	1g5a	A	578	587	FGNFSEYPQT	EEE-SSS-EE	bbxababxbb
1gef_A_42	1gef	A	48	57	KVTKKDHLYV	EEESSS-EEE	bbbaxabbxb
1gjw_A_593	1gjw	A	598	607	AANVGKEPKE	EEE-SSS-EE	bbxaxabwbb
1iby_A_47	1iby	A	52	61	VENKSPISEG	EEE-SSS-EE	bbxaxabpbb
1ji1_A_578	1ji1	A	582	591	VLNNDSVSHT	EEE-SSS-EE	bbbaxabxbx
1ji2_A_526	1ji2	A	531	540	VLNNRGEKQT	EEE-SSS-EE	bbxxbabxbb
1kvk_A_28	1kvk	A	42	51	RPQSNGKVSL	EE-SSSEEEE	bxbapabbbb
1l0q_A_345	1l0q	A	345	353	.SSKKQNPTH	.EE-SSS-EE	.bbaxabxbb
1l4i_A_141	1l4i	A	142	151	LFNPTPYYLT	EE--SSS-EE	bbbababxbb
1m53_A_543	1m53	A	548	557	VVNFKEYPVR	EEE-SSS-EE	bbxaxabwbb
1mxg_A_364	1mxg	A	367	376	YINLSPNWVG	EEE-SSS-EE	bbbaxabxbb
1n7o_A_677	1n7o	A	684	693	IQNTSTDTAA	EEE-SSS-EE	xbbaxaxxbb
1nof_A_347	1nof	A	351	360	AVNTNDSDQM	EEE-SSS-EE	bbbaxabxbx
1nzi_A_82	1nzi	A	84	93	FQVPYNKLQV	EEESSSEEEE	bbbababbbb
1od5_A_131	1od5	A	133	142	TYNTGDEPVV	EEE-SSS-EE	bbxaxaxxxb
1ogs_A_456	1ogs	A	460	469	VLNRSSKDVP	EEE-SSS-EE	bbbaxabxbw
1ok0_A_20	1ok0	A	23	32	ADNGCAETVT	EEE-SSS-EE	bbxaxabpbb
1p5v_A_166	1p5v	A	169	178	AENPSPFYMN	EEE-SSS-EE	xbbaxabxbx
1pfo_*_392	1pfo	-	396	405	LDHSGAYVAQ	EEE--SS-EE	bbbaxabxbb
1pm4_A_96	1pm4	A	100	109	IKNNSSETSN	EEE-SSS-EE	bbxaxaxxbx
1q5h_A_87	1q5h	A	90	99	LFNFGKEKFE	EEE-SSS-EE	xbbaxabpbb
1qxr_A_135	1qxr	A	138	147	TVNIGDEPFI	EEE-SSS-EE	bbxababpbb
1row_A_17	1row	A	23	32	LVNGGAEKIV	EEE-SSS-EE	xbbaxabxbb
1snz_A_267	1snz	A	271	280	VYTTQPGVQF	EEESSSEEEE	bbbaxabbxb
1spp_B_75	1spp	B	81	90	FLSTANTMTI	EE-SSSEEEE	bbxababbbb
1ug9_A_702	1ug9	A	703	712	STADSATAVV	EE-SSSEEEE	bbxababbxb
1vk3_A_307	1vk3	A	313	321	EVIEEPVYR.	EEESS-EEE.	bxbaxabbb.
2apr_*_289	2apr	-	290	299	GYGNWGFAII	EEESSSSEEE	bbbababxbx
4ubp_B_27	4ubp	B	32	41	VSNTGDRPIQ	EEE-SSS-EE	bbxaxabxbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1euc_B_258	1euc	B	PO4PHOSPHATE ION	K - 258
1euc_B_258	1euc	B	ZNZINC ION	L - 262
1euc_B_258	1euc	B	ZNZINC ION	C - 268
1euc_B_258	1euc	B	ZNZINC ION	V - 270
1euw_A_96	1euw	A	EMCETHYL MERCURY ION	Q - 96
1euw_A_96	1euw	A	GOLGLYCEROL	Q - 96
1euw_A_96	1euw	A	GOLGLYCEROL	L - 97
1euw_A_96	1euw	A	GOLGLYCEROL	M - 98
1euw_A_96	1euw	A	GOLGLYCEROL	I - 99
1euw_A_96	1euw	A	GOLGLYCEROL	S - 100
1f42_A_267	1f42	A	MNB5-MERCAPTO-2-NITRO-BENZOIC ACID	V - 267
1f42_A_267	1f42	A	MNB5-MERCAPTO-2-NITRO-BENZOIC ACID	F - 268
1fi2_A_137	1fi2	A	MNMANGANESE (II) ION	H - 137
1fi2_A_137	1fi2	A	MNMANGANESE (II) ION	Q - 139
1fi2_A_137	1fi2	A	MNMANGANESE (II) ION	M - 149
1fi2_A_137	1fi2	A	MNMANGANESE (II) ION	V - 151
1fi2_A_137	1fi2	A	MNMANGANESE (II) ION	F - 153
1iby_A_47	1iby	A	HEZHEXANE-1,6-DIOL	S - 56
1iby_A_47	1iby	A	HEZHEXANE-1,6-DIOL	I - 58
1iby_A_47	1iby	A	CUCOPPER (II) ION	S - 59
1iby_A_47	1iby	A	HEZHEXANE-1,6-DIOL	S - 59
1iby_A_47	1iby	A	CUCOPPER (II) ION	E - 60
1iby_A_47	1iby	A	HEZHEXANE-1,6-DIOL	E - 60
1iby_A_47	1iby	A	CUCOPPER (II) ION	G - 61
1kvk_A_28	1kvk	A	ATPADENOSINE-5'-TRIPHOSPHATE	T - 37
1kvk_A_28	1kvk	A	ATPADENOSINE-5'-TRIPHOSPHATE	L - 53
1mxg_A_364	1mxg	A	MGMAGNESIUM ION	R - 377
1nzi_A_82	1nzi	A	MGMAGNESIUM ION	S - 97
1od5_A_131	1od5	A	CO3CARBONATE ION	Y - 131
1od5_A_131	1od5	A	CO3CARBONATE ION	W - 132
1od5_A_131	1od5	A	CO3CARBONATE ION	T - 133
1od5_A_131	1od5	A	CO3CARBONATE ION	V - 141
1od5_A_131	1od5	A	CO3CARBONATE ION	A - 143
1q5h_A_87	1q5h	A	DUDDEOXYURIDINE-5'-DIPHOSPHATE	G - 87
1q5h_A_87	1q5h	A	DUDDEOXYURIDINE-5'-DIPHOSPHATE	V - 88
1q5h_A_87	1q5h	A	DUDDEOXYURIDINE-5'-DIPHOSPHATE	V - 89
1qxr_A_135	1qxr	A	NINICKEL (II) ION	H - 136
1qxr_A_135	1qxr	A	PA55-PHOSPHOARABINONIC ACID	H - 136
1qxr_A_135	1qxr	A	PA55-PHOSPHOARABINONIC ACID	R - 137
1qxr_A_135	1qxr	A	PA55-PHOSPHOARABINONIC ACID	T - 138
1qxr_A_135	1qxr	A	PA55-PHOSPHOARABINONIC ACID	F - 148
1qxr_A_135	1qxr	A	PA55-PHOSPHOARABINONIC ACID	A - 150
1qxr_A_135	1qxr	A	PA55-PHOSPHOARABINONIC ACID	I - 151
1qxr_A_135	1qxr	A	NINICKEL (II) ION	Y - 152
1qxr_A_135	1qxr	A	PA55-PHOSPHOARABINONIC ACID	Y - 152
1vk3_A_307	1vk3	A	MSESELENOMETHIONINE	Y - 320
1vk3_A_307	1vk3	A	MSESELENOMETHIONINE	R - 321

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1od5_A_131	1od5	A	AC1CO3 BINDING SITE FOR CHAIN A	Y - 131
1od5_A_131	1od5	A	AC1CO3 BINDING SITE FOR CHAIN A	T - 133
1ogs_A_456	1ogs	A	AC8SO4 BINDING SITE FOR CHAIN A	K - 473

Clusters included in this Subclass