ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.10.1

Subclass Accession number: 1745
Subclass: 3.10.1

PSSM

Type: AR beta-beta link
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 9

Average sequence ID (%) : 16.1 +/- 18.5
Average RMSD (Å) : 0.856 +/- 0.309

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 90-135

rho (°): 90-135

Consensus Sequence:	XhphpXh
(φψ)-conformation:	bbpbabb

Pattern:	x	x	[FILVY]	[ADER]	[ACGLPTV]	[DEHQ]	x	[apv]	[ailv]	[filmtv]
Conservation:	-1.000	-1.331	0.780	0.502	-0.964	1.704	-1.066	0.071	0.569	-0.265

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a12_A_113	1a12	A	113	122	GKVELQEKVV	EE----S-EE	bxxxbabxxa
1aco_*_61	1aco	-	62	71	LRLRPDRVAM	EEE--SEEEE	xbbbxabbbb
1g2i_A_133	1g2i	A	133	142	EWVDAEVVVD	EE--SS-EEE	xxbxbabbbb
1i7n_A_175	1i7n	A	177	186	RSFRPDFVLI	EEE--SEEEE	bbbbxabbbb
1lvl_*_254	1lvl	-	254	262	.RLEADRVLV	.EE--S-EEE	.bbxbabbbx
1plq_*_59	1plq	-	59	67	.EYRCDHPVT	.EE--SS-EE	.bbbbabpbb
1ps9_A_611	1ps9	A	613	622	QVLAVDNVVI	EEE--SEEEE	bbxxbabbxx
1utc_A_190	1utc	A	192	201	QPIEGHAASF	EEE--SEEEE	bwbxbabbbb
3lad_A_138	3lad	A	139	148	QVLDTENVIL	EEE--S-EEE	bbbbbabbbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1aco_*_61	1aco	*	FS4IRON/SULFUR CLUSTER	Q - 72
1aco_*_61	1aco	*	TRAACONITATE ION	Q - 72
1g2i_A_133	1g2i	A	MSESELENOMETHIONINE	E - 133
1g2i_A_133	1g2i	A	MSESELENOMETHIONINE	W - 134
1g2i_A_133	1g2i	A	MSESELENOMETHIONINE	V - 139
1plq_*_59	1plq	*	HGMERCURY (II) ION	Y - 60
1plq_*_59	1plq	*	HGMERCURY (II) ION	R - 61
1plq_*_59	1plq	*	HGMERCURY (II) ION	C - 62
1plq_*_59	1plq	*	HGMERCURY (II) ION	D - 63
1plq_*_59	1plq	*	HGMERCURY (II) ION	H - 64
1plq_*_59	1plq	*	HGMERCURY (II) ION	P - 65
1plq_*_59	1plq	*	HGMERCURY (II) ION	V - 66

Clusters included in this Subclass

CLUSTER: AR.3.126

CLUSTER: AR.4.166

CLUSTER: AR.4.80

CLUSTER: AR.5.99