Information on SUBCLASS 2.8.5 |
Subclass Accession number: 175
Subclass: 2.8.5 Type: HE alpha-beta DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 14.3 +/- 14.3 Average RMSD (Å) : 0.833 +/- 0.115 Consensus geometry
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Consensus Sequence: | ppXXhX |
(φψ)-conformation: | aappbb |
Pattern: | x | [EL] | x | [AIV] | x | [ERW] | x | [L] | [NTY] | [DET] | x | [DP] | [FIV] | [DPQ] |
Conservation: | -0.625 | -0.658 | -1.362 | 0.201 | -0.469 | -0.581 | 0.089 | 2.434 | -0.469 | 0.201 | -0.804 | 1.644 | 0.424 | -0.023 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1jlr_A_59 | 1jlr | A | 71 | 84 | RLLIEEALNELPFQ | HHHHHHHGGGS-EE | aaaaaaaaaaxxbb |
1qo0_A_308 | 1qo0 | A | 308 | 321 | VEDVQRHLYDIDID | HHHHHHHHSS--EE | aaaaaaaaaabxbx |
1so2_A_739 | 1so2 | A | 745 | 758 | VLHAVWYLTTRPVP | HHHHHHHHTTS-EE | aaaaaaaaaaxpbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1jlr_A_59 | 1jlr | A | GTPGUANOSINE-5'-TRIPHOSPHATE | K - 59 |
1jlr_A_59 | 1jlr | A | GTPGUANOSINE-5'-TRIPHOSPHATE | E - 60 |
1jlr_A_59 | 1jlr | A | GTPGUANOSINE-5'-TRIPHOSPHATE | F - 64 |
1jlr_A_59 | 1jlr | A | GTPGUANOSINE-5'-TRIPHOSPHATE | Y - 65 |
1jlr_A_59 | 1jlr | A | GTPGUANOSINE-5'-TRIPHOSPHATE | R - 68 |
1jlr_A_59 | 1jlr | A | GTPGUANOSINE-5'-TRIPHOSPHATE | E - 75 |
1jlr_A_59 | 1jlr | A | GTPGUANOSINE-5'-TRIPHOSPHATE | L - 78 |
1jlr_A_59 | 1jlr | A | GTPGUANOSINE-5'-TRIPHOSPHATE | L - 81 |
1jlr_A_59 | 1jlr | A | GTPGUANOSINE-5'-TRIPHOSPHATE | P - 82 |
1jlr_A_59 | 1jlr | A | GTPGUANOSINE-5'-TRIPHOSPHATE | F - 83 |
1so2_A_739 | 1so2 | A | MGMAGNESIUM ION | H - 741 |
1so2_A_739 | 1so2 | A | MGMAGNESIUM ION | V - 745 |
Clusters included in this Subclass |
CLUSTER: HE.5.149 |