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Information on SUBCLASS 2.8.5
Subclass Accession number: 175
Subclass: 2.8.5 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 14.3 +/- 14.3
Average RMSD (Å) : 0.833 +/- 0.115

Consensus geometry
d (Å): 11 delta (°): 0-45 theta (°): 45-90 rho (°): 90-135
Consensus Sequence: ppXXhX
(φψ)-conformation: aappbb
Pattern: x[EL]x[AIV]x[ERW]x[L][NTY][DET]x[DP][FIV][DPQ]
Conservation:-0.625-0.658-1.3620.201-0.469-0.5810.0892.434-0.4690.201-0.8041.6440.424-0.023
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1jlr_A_591jlr   A7184RLLIEEALNELPFQHHHHHHHGGGS-EEaaaaaaaaaaxxbb
1qo0_A_3081qo0   A308321VEDVQRHLYDIDIDHHHHHHHHSS--EEaaaaaaaaaabxbx
1so2_A_7391so2   A745758VLHAVWYLTTRPVPHHHHHHHHTTS-EEaaaaaaaaaaxpbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1jlr_A_591jlr   A     GTPGUANOSINE-5'-TRIPHOSPHATE K - 59
1jlr_A_591jlr   A     GTPGUANOSINE-5'-TRIPHOSPHATE E - 60
1jlr_A_591jlr   A     GTPGUANOSINE-5'-TRIPHOSPHATE F - 64
1jlr_A_591jlr   A     GTPGUANOSINE-5'-TRIPHOSPHATE Y - 65
1jlr_A_591jlr   A     GTPGUANOSINE-5'-TRIPHOSPHATE R - 68
1jlr_A_591jlr   A     GTPGUANOSINE-5'-TRIPHOSPHATE E - 75
1jlr_A_591jlr   A     GTPGUANOSINE-5'-TRIPHOSPHATE L - 78
1jlr_A_591jlr   A     GTPGUANOSINE-5'-TRIPHOSPHATE L - 81
1jlr_A_591jlr   A     GTPGUANOSINE-5'-TRIPHOSPHATE P - 82
1jlr_A_591jlr   A     GTPGUANOSINE-5'-TRIPHOSPHATE F - 83
1so2_A_7391so2   A     MGMAGNESIUM ION H - 741
1so2_A_7391so2   A     MGMAGNESIUM ION V - 745

Clusters included in this Subclass
CLUSTER: HE.5.149