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Information on SUBCLASS 3.18.1
Subclass Accession number: 1765
Subclass: 3.18.1 PSSM
Type: AR beta-beta link
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 2.4 (>75 %)  2.4.1 (>75 %)  2.4.1.19
GO : GO:0004553 (>75 %)  GO:0016160 (>75 %)  GO:0016798 (>75 %)  
SCOP : 48725 (>50 %)  49451 (>50 %)  49452 (>50 %)  49453 (>50 %)  53612 (>75 %)  53613 (>75 %)  53614 (>75 %)  81282 (>50 %)  81296 (>50 %)  
 Number of loops: 6

Average sequence ID (%) : 17.3 +/- 16.9
Average RMSD (Å) : 0.833 +/- 0.197

Consensus geometry
d (Å): 13 delta (°): 0-45 theta (°): 45-90 rho (°): 90-135
Consensus Sequence: XhGpXXX
(φψ)-conformation: bbeppbb
Pattern: x[tvw]x[agilv][G][ehs][nptv]x[aktv][ad]
Conservation:-1.000-0.210-0.519-0.5302.6100.118-0.389-0.488-0.377-0.215
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1mjs_A_2411mjs   A241249.QRVGETFHA.EE-S--EEE.bxbexxxbx
1pam_A_6591pam   A661670TWEGGANRTFEE--SS-EEEbxxxexxxbb
1qho_A_6601qho   A661670QWENGSNHVAEE--SS-EEEbxxxexxxbb
1rkd_*_61rkd   -716LVVLGSINADEEEE---EEEbbbbexbbxx
1v1a_A_41v1a   A413VVTAGEPLVAEEEES--EEEbbbbexwbbx
1vk4_A_31vk4   A311.TFIGHVSKD.EEE---EEE.bbbexxbxx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1qho_A_6601qho   A     MALMALTOSE W - 662
1qho_A_6601qho   A     MALMALTOSE E - 663
1qho_A_6601qho   A     MALMALTOSE N - 664
1qho_A_6601qho   A     MALMALTOSE G - 665
1qho_A_6601qho   A     MALMALTOSE N - 667
1rkd_*_61rkd   *     RIBRIBOSE S - 12
1rkd_*_61rkd   *     RIBRIBOSE N - 14
1rkd_*_61rkd   *     RIBRIBOSE A - 15
1rkd_*_61rkd   *     RIBRIBOSE D - 16
1rkd_*_61rkd   *     PO4PHOSPHATE ION H - 17
1v1a_A_41v1a   A     KDG2-KETO-3-DEOXYGLUCONATE E - 9
1v1a_A_41v1a   A     KDG2-KETO-3-DEOXYGLUCONATE L - 11
1vk4_A_31vk4   A     MSESELENOMETHIONINE T - 3
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1rkd_*_61rkd   * RB1RESIDUES MAKING DIRECT HYDROGEN BONDS WITH RIBOSE.N - 14
1rkd_*_61rkd   * RB1RESIDUES MAKING DIRECT HYDROGEN BONDS WITH RIBOSE.D - 16
1v1a_A_41v1a   A AC1KDG BINDING SITE FOR CHAIN AL - 11

Clusters included in this Subclass
CLUSTER: AR.4.66