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PDB code:

Information on SUBCLASS 4.1.1

Subclass Accession number: 1778 Subclass: 4.1.1 Type: AR beta-beta link DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation SCOP : 48726 (>75 %)  51160 (>75 %)  51161 (>75 %)

Number of loops: 53 Average sequence ID (%) : 20.3 +/- 19.4 Average RMSD (Å) : 0.526 +/- 0.270 Consensus geometry d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1aac_*_35	1aac	-	36	45	HVKVGDTVTW	EEE-TT-EEE	bbbpvxbbbx
1bd2_D_9	1bd2	D	11	20	SVQEGRISIL	EEETTS-EEE	bbpxgxbbbb
1cdy_*_107	1cdy	-	107	116	HLLQGQSLTL	EEETT--EEE	bbxpvxbbbb
1cdy_*_2	1cdy	-	5	14	LGKKGDTVEL	EEETTS-EEE	bbbpvxbbbx
1cs6_A_117	1cs6	A	118	127	KITEGWGVMF	EEETTS-EEE	bbxpgxxbbb
1cs6_A_222	1cs6	A	224	233	YALTGQMVTL	EEETT--EEE	bbbpvxbbbb
1cs6_A_310	1cs6	A	311	320	EADIGSDLRW	EEETT--EEE	bbxpvxbbbb
1eaj_A_26	1eaj	A	30	39	EKAKGETAYL	EEETTS-EEE	bbxpvxbxbb
1f2q_A_15	1f2q	A	15	24	RIFKGENVTL	EEETT--EEE	bbxpvxbbbb
1f2q_A_96	1f2q	A	96	105	VVMEGQPLFL	EEETTS-EEE	bbxpgxxbbb
1f97_A_141	1f97	A	141	150	SVTIGNRAVL	EEETTS-EEE	bbxpgxxbbx
1f97_A_36	1f97	A	38	47	QVPENESIKL	EEETT--EEE	bbxpvbxbbx
1flt_X_144	1flt	X	147	156	HMTEGRELVI	EE-TTS-EEE	xbbpvbxbbb
1fo0_A_9	1fo0	A	11	20	SVMEKTTVTM	EEETT--EEE	bbbpvxbbbx
1g0x_A_111	1g0x	A	111	120	VVNSGGNVTL	EEETT--EEE	xbxpvxbbxb
1gl4_B_1779	1gl4	B	1781	1790	SVRPGADVTF	EE-TT--EEE	bbxpgxbbbb
1gsm_A_12	1gsm	A	14	23	AVALGASRQL	EEETT--EEE	xbxpvxbbbb
1gtt_A_45	1gtt	A	45	54	VIGCGEPIPF	EE-TT--EEE	xbxpvxxxxx
1hms_*_60	1hms	-	63	72	SFKLGVEFDE	EE-TT--EEE	bbbxvbxbxb
1hnf_*_7	1hnf	-	10	19	WGALGQDINL	EEETTS-EEE	bbbpgbxbbb
1i1r_A_15	1i1r	A	15	24	VVQLHSNFTA	EEETT--EEE	bbxpvxbbbb
1iil_E_166	1iil	E	168	177	AVPAANTVKF	EEETTS-EEE	bbxpvxxbbb
1ijq_A_487	1ijq	A	491	500	FRENGSKPRA	EE-TT--EEE	bbbxvxbxax
1kgc_D_9	1kgc	D	11	20	ESNEEEPVHL	EEETTS-EEE	bbbpvxxbbx
1kxv_C_10	1kxv	C	11	20	TVPAGGSLRL	EE-TT--EEE	bbxpvxbbbx
1l0q_A_317	1l0q	A	317	326	YIFLSEPVQF	EEETT--EEE	bbxpvxxbbb
1lmi_A_5	1lmi	A	6	15	TGKLGSELTM	EEETT-EEEE	bbxpvbxbxb
1lp9_E_9	1lp9	E	11	20	TLTEGLPVML	EEETTS-EEE	bbxpvxxxbb
1mju_H_9	1mju	H	11	20	LVKPGASVKL	EE-TT--EEE	xbxpvxbbbx
1mju_L_10	1mju	L	12	21	PVTPGESVSI	EE-TTS-EEE	wbxpvxxbbb
1neu_*_8	1neu	-	10	19	YGAVGSQVTL	EEETTS-EEE	bbxxvbbbbx
1nko_A_33	1nko	A	35	44	TVQEGMCVHV	EEETT--EEE	bbxpvbbbbb
1nkr_*_17	1nkr	-	17	26	LVKSEETVIL	EEETT--EEE	xbxpvxxbbx
1nlq_A_79	1nlq	A	79	88	VEFYESKVTF	EEEESS-EEE	bbbblbxbbb
1npu_A_8	1npu	A	10	19	TVSEGANATF	EEETTS-EEE	bbxpgxxbbb
1oga_D_11	1oga	D	13	22	SIQEGENLTV	EEETT--EEE	bbxpvxbbbb
1oga_E_12	1oga	E	14	23	FRKEGQNVTL	EEETT--EEE	bbxpvbxbbx
1oll_A_109	1oll	A	109	118	EVISGEKVTF	EEETT-EEEE	bbxpgxxbbx
1oll_A_14	1oll	A	14	23	MVPKEKQVTI	EEETT--EEE	xbppvxbbbb
1pm4_A_72	1pm4	A	77	86	RNDIDKPLKY	EEETT--EEE	bbxpvbxbbb
1qfo_A_9	1qfo	A	11	20	QGLSGSCLLI	EEETTS-EEE	bbbpvxbbbx
1qxr_A_117	1qxr	A	121	130	SMEPGTVVYV	EE-TT-EEEE	xbbpgxbbxx
1qz1_A_108	1qz1	A	109	118	EFKEGEDAVI	EEETTS-EEE	bbxpgxxxbx
1rhf_A_10	1rhf	A	13	22	TVSQGQPVKL	EEETT--EEE	bbxpvxwbbb
1ru4_A_339	1ru4	A	339	347	.VSLSASVTV	.EEESS-EEE	.bbbvbxbbb
1svb_*_20	1svb	-	24	33	VLELGGCVTI	EEETT--EEE	bxbpvbbbbb
1tvd_A_10	1tvd	A	11	20	TVASGSEVVL	EEETT--EEE	bbxpvxbbbb
1uct_A_18	1uct	A	18	27	VIPLDGSVKI	EEETT--EEE	bbxpvxbbbb
1vca_A_10	1vca	A	12	21	LAQIGDSVSL	EEETTS-EEE	xbxpvxbbbb
1vca_A_103	1vca	A	103	111	.LEAGKPITV	.EETTS-EEE	.xbpvbxbbb
2f5b_H_11	2f5b	H	11	20	LVKPTQTLTL	EE-TTS-EEE	bbxpvxbbbb
2fbj_H_10	2fbj	H	11	20	LVQPGGSLKL	EE-TT--EEE	xbxpvxbbbb
2fcb_A_101	2fcb	A	101	110	EFQEGETIVL	EE-TT--EEE	bbbxgxxbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1f2q_A_15	1f2q	A	NAGN-ACETYL-D-GLUCOSAMINE	G - 19
1f2q_A_15	1f2q	A	NAGN-ACETYL-D-GLUCOSAMINE	E - 20
1f2q_A_15	1f2q	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 21
1hms_*_60	1hms	*	OLAOLEIC ACID	T - 60
1hnf_*_7	1hnf	*	NAGN-ACETYL-D-GLUCOSAMINE	L - 13
1hnf_*_7	1hnf	*	NAGN-ACETYL-D-GLUCOSAMINE	N - 18
1mju_H_9	1mju	H	5HPPYROGLUTAMIC ACID	S - 25
1nlq_A_79	1nlq	A	MGMAGNESIUM ION	K - 89
1nlq_A_79	1nlq	A	MGMAGNESIUM ION	L - 90
1rhf_A_10	1rhf	A	MSESELENOMETHIONINE	V - 26
1rhf_A_10	1rhf	A	MSESELENOMETHIONINE	E - 27

Clusters included in this Subclass

CLUSTER: AR.3.7

CLUSTER: AR.4.3

CLUSTER: AR.5.2

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