Logo
Information on SUBCLASS 5.3.1
Subclass Accession number: 180
Subclass: 5.3.1
Type: HH alpha-alpha
DB: ArchDB-KI
Number of loops: 3

Average sequence ID (%) : 100.0 +/- 0.0
Average RMSD (Å) : 0.27 +/- 0.05

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: KSGSELGKQ
(φψ)-conformation: aalpapgaa
Pattern: [T][G][D][M][L][R][A][A][V][K][S][G][S][E][L][G][K][Q][A][K][D][I][M]
Conservation:0.2241.5101.5100.224-1.0620.224-1.062-1.062-1.0620.224-1.0621.510-1.0620.224-1.0621.5100.2240.224-1.0620.2241.510-1.0620.224
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ake_A_311ake   A3153TGDMLRAAVKSGSELGKQAKDIMHHHHHHHHHHHT-TTTGGGHHHHaaaaaaaaaaavxaxgaaaaaaa
1ank_A_311ank   A3153TGDMLRAAVKSGSELGKQAKDIMHHHHHHHHHHHT-TTTTT-HHHHaaaaaaaaaaavpaxvaaaaaaa
2eck_A_312eck   A3153TGDMLRAAVKSGSELGKQAKDIMHHHHHHHHHHTT-TTTGGGHHHHaaaaaaaaaaalpaxNaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ake_A_311ake   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE T - 31
1ake_A_311ake   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE G - 32
1ake_A_311ake   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE D - 33
1ake_A_311ake   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE L - 35
1ake_A_311ake   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE R - 36
1ake_A_311ake   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE A - 49
1ake_A_311ake   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE I - 52
1ake_A_311ake   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE M - 53
1ank_A_311ank   A     AMPADENOSINE MONOPHOSPHATE T - 31
1ank_A_311ank   A     AMPADENOSINE MONOPHOSPHATE G - 32
1ank_A_311ank   A     AMPADENOSINE MONOPHOSPHATE D - 33
1ank_A_311ank   A     AMPADENOSINE MONOPHOSPHATE L - 35
1ank_A_311ank   A     AMPADENOSINE MONOPHOSPHATE R - 36
1ank_A_311ank   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER R - 36
1ank_A_311ank   A     AMPADENOSINE MONOPHOSPHATE A - 49
1ank_A_311ank   A     AMPADENOSINE MONOPHOSPHATE I - 52
1ank_A_311ank   A     AMPADENOSINE MONOPHOSPHATE M - 53
2eck_A_312eck   A     AMPADENOSINE MONOPHOSPHATE T - 31
2eck_A_312eck   A     AMPADENOSINE MONOPHOSPHATE G - 32
2eck_A_312eck   A     AMPADENOSINE MONOPHOSPHATE D - 33
2eck_A_312eck   A     AMPADENOSINE MONOPHOSPHATE L - 35
2eck_A_312eck   A     AMPADENOSINE MONOPHOSPHATE R - 36
2eck_A_312eck   A     AMPADENOSINE MONOPHOSPHATE A - 49
2eck_A_312eck   A     AMPADENOSINE MONOPHOSPHATE I - 52
2eck_A_312eck   A     AMPADENOSINE MONOPHOSPHATE M - 53
Bibliographic annotations
LoopPDBChainAnnotationResidue
1ake_A_311ake   RefC.W.MUELLER,G.E.SCHULZ. STRUCTURE OF THE COMPLEX BETWEEN ADENYLATE KINASE FROM ESCHERICHIA COLI AND THE INHIBITOR AP=5=A REFINED AT 1.9 ANGSTROMS RESOLUTION: A MODEL FOR A CATALYTIC TRANSITION STATE  J.MOL.BIOL. v.224;159,1992AAMP BINDING RESIDUE R - 36
1ank_A_311ank   RefM.B.BERRY,B.MEADOR,T.BILDERBACK,P.LIANG,M.GLASER,G.N.PHILLIPS JUNIOR. THE CLOSED CONFORMATION OF A HIGHLY FLEXIBLE PROTEIN: THE STRUCTURE OF E. COLI ADENYLATE KINASE WITH BOUND AMP AND AMPPNP  PROTEINS v.19;183,1994AAMP BINDING RESIDUE T - 31
1ank_A_311ank   RefM.B.BERRY,B.MEADOR,T.BILDERBACK,P.LIANG,M.GLASER,G.N.PHILLIPS JUNIOR. THE CLOSED CONFORMATION OF A HIGHLY FLEXIBLE PROTEIN: THE STRUCTURE OF E. COLI ADENYLATE KINASE WITH BOUND AMP AND AMPPNP  PROTEINS v.19;183,1994AMg ION BINDING RESIDUED - 33
1ank_A_311ank   RefM.B.BERRY,B.MEADOR,T.BILDERBACK,P.LIANG,M.GLASER,G.N.PHILLIPS JUNIOR. THE CLOSED CONFORMATION OF A HIGHLY FLEXIBLE PROTEIN: THE STRUCTURE OF E. COLI ADENYLATE KINASE WITH BOUND AMP AND AMPPNP  PROTEINS v.19;183,1994AAMP BINDING RESIDUE R - 36
2eck_A_312eck   RefM.B.BERRY,T.BILDERBACK,M.GLASER,G.N.PHILLIPS JUNIOR. A CRYSTAL STRUCTURE OF E. COLI ADENYLATE KINASE WITH BOUND AMP AND ADP  PROTEINS v.15;276,1998AAMP BINDING RESIDUE T - 31
2eck_A_312eck   RefM.B.BERRY,T.BILDERBACK,M.GLASER,G.N.PHILLIPS JUNIOR. A CRYSTAL STRUCTURE OF E. COLI ADENYLATE KINASE WITH BOUND AMP AND ADP  PROTEINS v.15;276,1998AMg ION BINDING RESIDUED - 33
2eck_A_312eck   RefM.B.BERRY,T.BILDERBACK,M.GLASER,G.N.PHILLIPS JUNIOR. A CRYSTAL STRUCTURE OF E. COLI ADENYLATE KINASE WITH BOUND AMP AND ADP  PROTEINS v.15;276,1998AAMP BINDING RESIDUE R - 36

Clusters included in this Subclass
CLUSTER: HH.8.5