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Information on SUBCLASS 4.13.1
Subclass Accession number: 1828
Subclass: 4.13.1 PSSM
Type: AR beta-beta link
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 2.6 (>75 %)  2.6.1 (>75 %)  2.6.1.1 (>75 %)  2.7 (>75 %)  2.7.1 (>75 %)  2.7.1.112 (>75 %)  
GO : GO:0004069 (>75 %)  GO:0004672 (>75 %)  GO:0004714 (>75 %)  GO:0004872 (>75 %)  GO:0004888 (>75 %)  GO:0005524 (>75 %)  GO:0008483 (>75 %)  GO:0016301 (>75 %)  GO:0016769 (>75 %)  GO:0016772 (>75 %)  GO:0016773 (>75 %)  GO:0019199 (>75 %)  
SCOP : 53382 (>75 %)  53383 (>75 %)  53384 (>75 %)  56111 (>75 %)  56112 (>75 %)  88854 (>75 %)  
 Number of loops: 11

Average sequence ID (%) : 17.9 +/- 17.8
Average RMSD (Å) : 0.645 +/- 0.169

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: hXhGpXXp
(φψ)-conformation: bbpgbpbb
Pattern: xx[aflvy]x[anpsv][G][dhkqrt]xx[ADEQRT][filtv]
Conservation:-0.414-0.352-0.139-0.546-0.2582.943-0.338-0.488-0.536-0.0100.137
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1crb_*_601crb   -6272MDFQVGKEFEEEEEETT--EEEbbbbpvbxbxx
1cyx_*_1811cyx   -183193IYAMAGMQTRLEEE-TT--EEEbxbbxvbbbbb
1l7l_A_141l7l   A1828IIYNPGDVITIEEE-TT--EEExbxbpvxbbbb
1m56_B_2261m56   B228238QDAVPGRLAQLEEE-TT--EEEbxbbpvbbbbb
1nez_G_141nez   G1424MDAELGQKVDLEEE-TT--EEEbbxxpvxxbbb
1p6p_A_561p6p   A6070NSFTVGKESEIEEEETTS-EEEbbbbpvbpbxx
1qwr_A_1641qwr   A165175YYVPSGTLHALEEE-TT--EEEbxbppvxxbbx
1r64_A_5661r64   A573583KTTENGHRIDFEESSTT--EEEbbabpgxxbbx
1rh1_A_621rh1   A6272SVLFPGIIRRIEEE-TT--EEEbbxxxvxxbxb
1v54_B_1701v54   B172182TDAIPGRLNQTEEE-TT--EEEbxbbxvbbxbb
1vca_A_1031vca   A103111..LEAGKPITV..EETTS-EEE..xbpvbxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1crb_*_601crb   *     RTLRETINOL Y - 60
1crb_*_601crb   *     RTLRETINOL M - 62
1l7l_A_141l7l   A     CACALCIUM ION S - 35
1m56_B_2261m56   B     MGMAGNESIUM ION D - 229
1m56_B_2261m56   B     PEHDI-STEAROYL-3-SN-PHOSPHATIDYLETHANOLAMINE R - 234
1qwr_A_1641qwr   A     ZNZINC ION V - 167
1qwr_A_1641qwr   A     ZNZINC ION H - 173
1r64_A_5661r64   A     NAGN-ACETYL-D-GLUCOSAMINE N - 577
1r64_A_5661r64   A     NAGN-ACETYL-D-GLUCOSAMINE G - 578
1r64_A_5661r64   A     NAGN-ACETYL-D-GLUCOSAMINE H - 579
1r64_A_5661r64   A     NAGN-ACETYL-D-GLUCOSAMINE R - 580
1v54_B_1701v54   B     MGMAGNESIUM ION D - 173
1v54_B_1701v54   B     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE R - 178

Clusters included in this Subclass
CLUSTER: AR.4.55
CLUSTER: AR.5.33
CLUSTER: AR.6.22