ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 4.16.1

Subclass Accession number: 1831
Subclass: 4.16.1

Type: AR beta-beta link
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 1 (>50 %)  2 (>50 %)  3 (>50 %)
GO : GO:0000166 (>75 %)  GO:0005524 (>75 %)  GO:0017076 (>75 %)  GO:0030554 (>75 %)
SCOP : 51125 (>75 %)  51126 (>75 %)  51150 (>50 %)

Number of loops: 3

Average sequence ID (%) : 23.3 +/- 20.2
Average RMSD (Å) : 0.667 +/- 0.153

Consensus geometry

d (Å): 17

delta (°): 0-45

theta (°): 45-90

rho (°): 45-90

Consensus Sequence:	XhXPXXXp
(φψ)-conformation:	bbppbabb

Pattern:	x	[LM]	x	[P]	[KTV]	x	x	[ES]	x	x
Conservation:	-0.364	0.526	-0.714	2.235	-0.514	-0.714	-0.551	0.095	-1.000	-1.000

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1nnh_A_35	1nnh	A	36	43	WLLPVIIS..	EE----EE..	xxxxbabb..
1qme_A_474	1qme	A	474	483	MLEPKFISAI	EE--B-EEEE	xbxxbababb
1vhz_A_36	1vhz	A	41	50	RMRPTNREAV	EE------EE	bxpwbaxbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1vhz_A_36	1vhz	A	APRADENOSINE-5-DIPHOSPHORIBOSE	R - 37
1vhz_A_36	1vhz	A	APRADENOSINE-5-DIPHOSPHORIBOSE	V - 38
1vhz_A_36	1vhz	A	APRADENOSINE-5-DIPHOSPHORIBOSE	Y - 39
1vhz_A_36	1vhz	A	APRADENOSINE-5-DIPHOSPHORIBOSE	E - 40
1vhz_A_36	1vhz	A	APRADENOSINE-5-DIPHOSPHORIBOSE	R - 41

Clusters included in this Subclass

CLUSTER: AR.5.165