ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 3.1.4

Subclass Accession number: 186
Subclass: 3.1.4

Type: HE alpha-beta
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Number of loops: 20

Average sequence ID (%) : 13.2 +/- 14.3
Average RMSD (Å) : 0.825 +/- 0.220

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 135-180

rho (°): 45-90

Consensus Sequence:	XXchpph
(φψ)-conformation:	aalpabb

Pattern:	[agitv]	x	x	[afiltv]	[afiklmv]	[ehknqry]	x	x	[aegkn]	x	[dehknqrstw]	[dehknqsy]	[afgipvwy]	x	x
Conservation:	0.324	-0.991	-0.939	0.199	0.365	1.294	-0.253	-1.316	2.647	-0.771	0.270	-0.202	0.391	-0.507	-0.513

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1aln_*_273	1aln	-	276	290	TSATLKALGCHSIDR	HHHHHHHHT---EEE	aaaaaaaagxabbbb
1c4x_A_81	1c4x	A	92	106	ILGLMNHFGIEKSHI	HHHHHHHHT-SSEEE	aaaaaaaavxabbxb
1cvl_*_61	1cvl	-	69	83	VKQVLAATGATKVNL	HHHHHHHH--S-EEE	aaaaaaaavxabbbb
1doz_A_196	1doz	A	204	218	AKLIAEGAGVSEYAV	HHHHHHHHT---EEE	aaaaaaaavxabbbb
1doz_A_235	1doz	A	239	253	TRDLFEQKGYQAFVY	HHHHHHHH--SEEEE	aaaaaaaavpabbbb
1g5c_A_64	1g5c	A	70	84	AAVAIYALGDNEIII	HHHHHHHH---EEEE	aaaaaaaavxabbbx
1hp1_A_192	1hp1	A	200	214	IQELQQTEKPDIIIA	HHHHHHHT--SEEEE	aaaaaaaalxabbbb
1iyk_A_189	1iyk	A	196	210	ITRRVNKQNIWQALY	HHHHHHTTT---EEE	aaaaaaaavbabbbb
1jye_A_163	1jye	A	170	184	GVEHLVALGHQQIAL	HHHHHHHHT--SEEE	aaaaaaaagxabbbb
1jyk_A_38	1jyk	A	42	56	QIEFLKEKGINDIII	HHHHHHHTT---EEE	aaaaaaaavxaxbbb
1jys_A_52	1jys	A	59	73	ATLLLEHCKPDVIIN	HHHHHHHH--SEEEE	aaaaaaaalxabbbb
1lar_A_1787	1lar	A	1796	1810	VHKTKEQFGQDGPIT	HHHHHHHTT--S-EE	aaaaaaaalxaxxxx
1m6y_A_85	1m6y	A	85	99	ADFLLKTLGIEKVDG	HHHHHHHTT-S-EEE	aaaaaaaavbabbab
1nul_A_40	1nul	A	43	57	GALLARELGIRHVDT	HHHHHHHHT---EEE	aaaaaaaavxaxbbb
1p1j_A_216	1p1j	A	227	241	IQNFKEENALDKVIV	HHHHHHHTT-S-EEE	aaaaaaaalxabbbb
1p42_A_78	1p42	A	80	94	ILSVLHLLEITNVTI	HHHHHHHTT--SEEE	aaaaaaaalxabbbb
1qtr_A_88	1qtr	A	95	109	IERLREMAGVEQWLV	HHHHHHHHT-SSEEE	aaaaaaaavbabbxb
1s4n_A_260	1s4n	A	260	273	VFKWMQENEKVYGF.	HHHHHHHTT--EEE.	aaaaaaaalbabbb.
1vhw_A_67	1vhw	A	74	88	VTELIKDYGVKKIIR	HHHHHHHH---EEEE	aaaaaaaavxabbbx
2dnj_A_140	2dnj	A	151	165	YLDVQQKWHLNDVML	HHHHHHHH----EEE	aaaaaaaalbaxbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1doz_A_196	1doz	A	MO6MAGNESIUM ION, 6 WATERS COORDINATED	Q - 199
1doz_A_196	1doz	A	MO6MAGNESIUM ION, 6 WATERS COORDINATED	Q - 221
1doz_A_235	1doz	A	MO6MAGNESIUM ION, 6 WATERS COORDINATED	Q - 236
1g5c_A_64	1g5c	A	ZNZINC ION	H - 87
1g5c_A_64	1g5c	A	EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID	H - 87
1hp1_A_192	1hp1	A	ZNZINC ION	H - 217
1hp1_A_192	1hp1	A	CO3CARBONATE ION	H - 217
1iyk_A_189	1iyk	A	MYATETRADECANOYL-COA	A - 189
1iyk_A_189	1iyk	A	MYATETRADECANOYL-COA	P - 190
1iyk_A_189	1iyk	A	MYATETRADECANOYL-COA	L - 192
1iyk_A_189	1iyk	A	MYATETRADECANOYL-COA	I - 193
1iyk_A_189	1iyk	A	MYATETRADECANOYL-COA	I - 196
1iyk_A_189	1iyk	A	MYATETRADECANOYL-COA	T - 197
1iyk_A_189	1iyk	A	MYATETRADECANOYL-COA	V - 200
1iyk_A_189	1iyk	A	MYATETRADECANOYL-COA	N - 201
1iyk_A_189	1iyk	A	MYATETRADECANOYL-COA	I - 205
1iyk_A_189	1iyk	A	MYATETRADECANOYL-COA	W - 206
1iyk_A_189	1iyk	A	MYATETRADECANOYL-COA	Q - 207
1iyk_A_189	1iyk	A	MYATETRADECANOYL-COA	A - 208
1iyk_A_189	1iyk	A	MYATETRADECANOYL-COA	Y - 210
1iyk_A_189	1iyk	A	MYATETRADECANOYL-COA	T - 211
1iyk_A_189	1iyk	A	MIM[CYCLOHEXYLETHYL]-[[[[4-[2-METHYL-1-IMIDAZOLYL-BUTYL] PHENYL]ACETYL]-SERYL]-LYSINYL]-AMINE	T - 211
1iyk_A_189	1iyk	A	MYATETRADECANOYL-COA	G - 212
1iyk_A_189	1iyk	A	MIM[CYCLOHEXYLETHYL]-[[[[4-[2-METHYL-1-IMIDAZOLYL-BUTYL] PHENYL]ACETYL]-SERYL]-LYSINYL]-AMINE	G - 212
1jyk_A_38	1jyk	A	MSESELENOMETHIONINE	F - 45
1jys_A_52	1jys	A	ADEADENINE	S - 76
1jys_A_52	1jys	A	ADEADENINE	A - 77
1jys_A_52	1jys	A	ADEADENINE	G - 78
1m6y_A_85	1m6y	A	MSESELENOMETHIONINE	I - 100
1p1j_A_216	1p1j	A	NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	W - 243
1p42_A_78	1p42	A	ZNZINC ION	E - 78
1p42_A_78	1p42	A	MYRMYRISTIC ACID	E - 78
1p42_A_78	1p42	A	ZNZINC ION	H - 79
1p42_A_78	1p42	A	MYRMYRISTIC ACID	H - 79
1vhw_A_67	1vhw	A	ADNADENOSINE	I - 72
1vhw_A_67	1vhw	A	ADNADENOSINE	R - 88
1vhw_A_67	1vhw	A	ADNADENOSINE	G - 90
1vhw_A_67	1vhw	A	ADNADENOSINE	S - 91
1vhw_A_67	1vhw	A	ADNADENOSINE	C - 92
1vhw_A_67	1vhw	A	ADNADENOSINE	G - 93
1vhw_A_67	1vhw	A	ADNADENOSINE	A - 94

Clusters included in this Subclass