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Information on SUBCLASS 5.4.2
Subclass Accession number: 1875
Subclass: 5.4.2 PSSM
Type: AR beta-beta link
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0004872 (>50 %)  GO:0004872 (>75 %)  GO:0005529 (>75 %)  GO:0005529 (>75 %)  GO:0005537 (>75 %)  GO:0030246 (>75 %)  GO:0030246 (>75 %)  GO:0048029 (>75 %)  
SCOP : 56435 (>75 %)  56435 (>75 %)  56436 (>75 %)  56436 (>75 %)  56437 (>75 %)  56437 (>75 %)  
Number of loops: 5

Average sequence ID (%) : 33.8 +/- 22.7
Average RMSD (Å) : 0.280 +/- 0.084

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: DXpCppXpp
(φψ)-conformation: bbpaappbp
Pattern: [VW][NS][DS]xx[C][DEQS][hkr]xx[nry][AW][ILV][C][EKNQY][IKT]
Conservation:0.7840.3950.267-0.880-0.7722.075-0.259-0.647-0.959-0.831-0.7900.7840.0542.075-0.615-0.681
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dv8_A_2631dv8   A263278WNDDVCQRPYRWVCETEEEE-TTS-BEEEEEExbxbxaaxxbxbbbbb
1e87_A_1801e87   A181196VSSMECEKNLYWICNKEEEE-TTS-BEEEEEEbbbbpaaxxbxbbbbb
1egi_A_7461egi   A746761WNDINCEHLNNWICQIEEEEETTS-BEEEEEEbbxbpaaxxbxbbbbb
1g1t_A_1041g1t   A104119WNDERCSKKKLALCYTEEEE-TTS-BEEEEEEbbxbxaaxbbxxbbbb
1k9j_A_3751k9j   A376391WNDNRCDVDNYWICKKEEEE-TTS-BEEEEEEbbxbxaaxxbxbbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dv8_A_2631dv8   A     CACALCIUM ION N - 264
1dv8_A_2631dv8   A     CACALCIUM ION D - 265
1dv8_A_2631dv8   A     CACALCIUM ION D - 266
1dv8_A_2631dv8   A     CACALCIUM ION E - 277
1dv8_A_2631dv8   A     CACALCIUM ION E - 279
1e87_A_1801e87   A     GOLGLYCEROL C - 186
1e87_A_1801e87   A     GOLGLYCEROL E - 187
1e87_A_1801e87   A     GOLGLYCEROL N - 189
1e87_A_1801e87   A     ZNZINC ION K - 196
1egi_A_7461egi   A     CACALCIUM ION N - 747
1egi_A_7461egi   A     CACALCIUM ION D - 748
1egi_A_7461egi   A     CACALCIUM ION I - 749
1g1t_A_1041g1t   A     GALD-GALACTOSE N - 105
1g1t_A_1041g1t   A     FUCFUCOSE N - 105
1g1t_A_1041g1t   A     CACALCIUM ION N - 105
1g1t_A_1041g1t   A     FUCFUCOSE D - 106
1g1t_A_1041g1t   A     CACALCIUM ION D - 106
1g1t_A_1041g1t   A     GALD-GALACTOSE E - 107
1g1t_A_1041g1t   A     1NAN-ACETYL-O-METHYL-D-GLUCOSAMINE E - 107
1g1t_A_1041g1t   A     FUCFUCOSE E - 107
1g1t_A_1041g1t   A     CACALCIUM ION E - 107
1g1t_A_1041g1t   A     1NAN-ACETYL-O-METHYL-D-GLUCOSAMINE R - 108
1g1t_A_1041g1t   A     FUCFUCOSE R - 108
1g1t_A_1041g1t   A     GALD-GALACTOSE K - 111
1g1t_A_1041g1t   A     GALD-GALACTOSE K - 113
1k9j_A_3751k9j   A     MANALPHA-D-MANNOSE G - 375
1k9j_A_3751k9j   A     MANALPHA-D-MANNOSE N - 377
1k9j_A_3751k9j   A     CACALCIUM ION N - 377
1k9j_A_3751k9j   A     MANALPHA-D-MANNOSE D - 378
1k9j_A_3751k9j   A     CACALCIUM ION D - 378
1k9j_A_3751k9j   A     MANALPHA-D-MANNOSE N - 379
1k9j_A_3751k9j   A     CACALCIUM ION N - 379
1k9j_A_3751k9j   A     MANALPHA-D-MANNOSE R - 380

Clusters included in this Subclass
CLUSTER: AR.6.27