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Information on SUBCLASS 3.2.4
Subclass Accession number: 196
Subclass: 3.2.4 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 15

Average sequence ID (%) : 10.8 +/- 13.0
Average RMSD (Å) : 0.847 +/- 0.236

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: XXcXXhX
(φψ)-conformation: aalppbb
Pattern: xxxxx[GKNQ]xx[afgivy]x
Conservation:0.107-0.223-0.879-0.328-0.1282.389-1.033-0.4020.949-0.452
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b5e_A_81b5e   A1726LALKEKDFVVHHHHTT--EEaaaaalxxbx
1d1l_A_281d1l   A3241KAIHAGRKIFHHHHTT--EEaaaaalxxbb
1fp5_A_4071fp5   A408417RDWIEGETYQHHHHTT--EEaaaaagpbbb
1j7n_A_6121j7n   A621630YLVDGNGRFVHHHHTT--EEaaaaalxbbx
1jnr_A_2741jnr   A276285WFLFFKCKAKHHHTS---EEaaaaalxbbb
1kv7_A_1481kv7   A150159RQVAMGLAGLHHHHTT--EEaaaaagxbbb
1l6x_A_3101l6x   A311320QDWLNGKEYKHHHHTT--EEaaaaavxxbb
1l6x_A_4141l6x   A415424SRWQQGNVFSHHHHTT--EEaaaaavxxbb
1m66_A_1071m66   A112121YAKEKQVPVLHHHHHT--EEaaaaalxwbb
1o63_A_181o63   A1827YLKKTGVIFEHHHHHT--EEaaaaagxbxa
1o7q_A_1151o7q   A121130YYAKQKITVGHHHHHT--EEaaaaalxbbx
1p1j_A_761p1j   A8695LANKHNVEFQHHHHTT--EEaaaaalxxbx
1qo8_A_2481qo8   A259268AAKEQGIDTRHHHHTT--EEaaaaavxxxx
1r0w_A_4301r0w   A432441HLCLVGNPVLHHHHTT-EEEaaaaavxxab
1umh_A_1951umh   A197206LLDTTQPAIVHHHHT--EEEaaaaalxpbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1o63_A_181o63   A     MSESELENOMETHIONINE Y - 18
1o63_A_181o63   A     MSESELENOMETHIONINE L - 19
1o63_A_181o63   A     MSESELENOMETHIONINE K - 20
1o63_A_181o63   A     MSESELENOMETHIONINE K - 21
1o63_A_181o63   A     MSESELENOMETHIONINE F - 26
1o63_A_181o63   A     MSESELENOMETHIONINE E - 29
1o7q_A_1151o7q   A     UDPURIDINE-5'-DIPHOSPHATE V - 133
1o7q_A_1151o7q   A     UDPURIDINE-5'-DIPHOSPHATE F - 134
1o7q_A_1151o7q   A     UDPURIDINE-5'-DIPHOSPHATE A - 135
1p1j_A_761p1j   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE N - 76
1p1j_A_761p1j   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE N - 77
1p1j_A_761p1j   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE G - 78
1qo8_A_2481qo8   A     FADFLAVIN-ADENINE DINUCLEOTIDE S - 248
1qo8_A_2481qo8   A     HEMPROTOPORPHYRIN IX CONTAINING FE P - 250
1qo8_A_2481qo8   A     FADFLAVIN-ADENINE DINUCLEOTIDE I - 253
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1o7q_A_1151o7q   A AC6UDP BINDING SITE FOR CHAIN AF - 134
1o7q_A_1151o7q   A AC6UDP BINDING SITE FOR CHAIN AA - 135

Clusters included in this Subclass
CLUSTER: HE.3.116
CLUSTER: HE.4.21