Information on SUBCLASS 3.2.4 |
Subclass Accession number: 196
Subclass: 3.2.4 Type: HE alpha-beta DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 15 Average sequence ID (%) : 10.8 +/- 13.0 Average RMSD (Å) : 0.847 +/- 0.236 Consensus geometry
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Consensus Sequence: | XXcXXhX |
(φψ)-conformation: | aalppbb |
Pattern: | x | x | x | x | x | [GKNQ] | x | x | [afgivy] | x |
Conservation: | 0.107 | -0.223 | -0.879 | -0.328 | -0.128 | 2.389 | -1.033 | -0.402 | 0.949 | -0.452 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1b5e_A_8 | 1b5e | A | 17 | 26 | LALKEKDFVV | HHHHTT--EE | aaaaalxxbx |
1d1l_A_28 | 1d1l | A | 32 | 41 | KAIHAGRKIF | HHHHTT--EE | aaaaalxxbb |
1fp5_A_407 | 1fp5 | A | 408 | 417 | RDWIEGETYQ | HHHHTT--EE | aaaaagpbbb |
1j7n_A_612 | 1j7n | A | 621 | 630 | YLVDGNGRFV | HHHHTT--EE | aaaaalxbbx |
1jnr_A_274 | 1jnr | A | 276 | 285 | WFLFFKCKAK | HHHTS---EE | aaaaalxbbb |
1kv7_A_148 | 1kv7 | A | 150 | 159 | RQVAMGLAGL | HHHHTT--EE | aaaaagxbbb |
1l6x_A_310 | 1l6x | A | 311 | 320 | QDWLNGKEYK | HHHHTT--EE | aaaaavxxbb |
1l6x_A_414 | 1l6x | A | 415 | 424 | SRWQQGNVFS | HHHHTT--EE | aaaaavxxbb |
1m66_A_107 | 1m66 | A | 112 | 121 | YAKEKQVPVL | HHHHHT--EE | aaaaalxwbb |
1o63_A_18 | 1o63 | A | 18 | 27 | YLKKTGVIFE | HHHHHT--EE | aaaaagxbxa |
1o7q_A_115 | 1o7q | A | 121 | 130 | YYAKQKITVG | HHHHHT--EE | aaaaalxbbx |
1p1j_A_76 | 1p1j | A | 86 | 95 | LANKHNVEFQ | HHHHTT--EE | aaaaalxxbx |
1qo8_A_248 | 1qo8 | A | 259 | 268 | AAKEQGIDTR | HHHHTT--EE | aaaaavxxxx |
1r0w_A_430 | 1r0w | A | 432 | 441 | HLCLVGNPVL | HHHHTT-EEE | aaaaavxxab |
1umh_A_195 | 1umh | A | 197 | 206 | LLDTTQPAIV | HHHHT--EEE | aaaaalxpbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1o63_A_18 | 1o63 | A | MSESELENOMETHIONINE | Y - 18 |
1o63_A_18 | 1o63 | A | MSESELENOMETHIONINE | L - 19 |
1o63_A_18 | 1o63 | A | MSESELENOMETHIONINE | K - 20 |
1o63_A_18 | 1o63 | A | MSESELENOMETHIONINE | K - 21 |
1o63_A_18 | 1o63 | A | MSESELENOMETHIONINE | F - 26 |
1o63_A_18 | 1o63 | A | MSESELENOMETHIONINE | E - 29 |
1o7q_A_115 | 1o7q | A | UDPURIDINE-5'-DIPHOSPHATE | V - 133 |
1o7q_A_115 | 1o7q | A | UDPURIDINE-5'-DIPHOSPHATE | F - 134 |
1o7q_A_115 | 1o7q | A | UDPURIDINE-5'-DIPHOSPHATE | A - 135 |
1p1j_A_76 | 1p1j | A | NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE | N - 76 |
1p1j_A_76 | 1p1j | A | NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE | N - 77 |
1p1j_A_76 | 1p1j | A | NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE | G - 78 |
1qo8_A_248 | 1qo8 | A | FADFLAVIN-ADENINE DINUCLEOTIDE | S - 248 |
1qo8_A_248 | 1qo8 | A | HEMPROTOPORPHYRIN IX CONTAINING FE | P - 250 |
1qo8_A_248 | 1qo8 | A | FADFLAVIN-ADENINE DINUCLEOTIDE | I - 253 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1o7q_A_115 | 1o7q | A | AC6UDP BINDING SITE FOR CHAIN A | F - 134 |
1o7q_A_115 | 1o7q | A | AC6UDP BINDING SITE FOR CHAIN A | A - 135 |
Clusters included in this Subclass |
CLUSTER: HE.3.116 |
CLUSTER: HE.4.21 |