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PDB code:

Information on SUBCLASS 12.1.1

Subclass Accession number: 197 Subclass: 12.1.1 Type: HH alpha-alpha DB: ArchDB-KI

Number of loops: 4 Average sequence ID (%) : 61.5 +/- 3.1 Average RMSD (Å) : 0.44 +/- 0.08 Consensus geometry d (Å): 5 delta (°): 0-45 theta (°): 0-45 rho (°): 45-90

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1be4_A_83	1be4	A	83	108	VVKTGRVMLGETNPADSKPGTIRGDF	HHHHHHHHH--SSGGG--TTSHHHHH	aaaaaaaaaexaxaaaxbxgxaaaaa
1ehw_B_83	1ehw	B	83	108	VVRASRAMIGHTDSAEAAPGTIRGDF	HHHHHHHHH--SSGGGS-TTSHHHHH	aaaaaaaaaepaxaaaxxxgxaaaaa
1nhk_R_82	1nhk	R	82	107	AVLANRDIMGATNPAQAAEGTIRKDF	HHHHHHHHH--SSGGG--TTSHHHHH	aaaaaaaaaepaxaaaxxxvxaaaaa
1nue_A_83	1nue	A	83	108	VVKTGRVMLGETNPADSKPGTIRGDF	HHHHHHHHH--SSGGG--TTSHHHHH	aaaaaaaaaexaxaaaxxpgxaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1be4_A_83	1be4	A	PCGCYCLIC GUANOSINE MONOPHOSPHATE	R - 88
1be4_A_83	1be4	A	PCGCYCLIC GUANOSINE MONOPHOSPHATE	T - 94
1be4_A_83	1be4	A	PCGCYCLIC GUANOSINE MONOPHOSPHATE	R - 105
1nhk_R_82	1nhk	R	CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE	T - 93
1nhk_R_82	1nhk	R	CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE	R - 104
1nue_A_83	1nue	A	GDPGUANOSINE-5'-DIPHOSPHATE	R - 88
1nue_A_83	1nue	A	MGMAGNESIUM ION	R - 88
1nue_A_83	1nue	A	GDPGUANOSINE-5'-DIPHOSPHATE	G - 92
1nue_A_83	1nue	A	GDPGUANOSINE-5'-DIPHOSPHATE	E - 93
1nue_A_83	1nue	A	GDPGUANOSINE-5'-DIPHOSPHATE	T - 94
1nue_A_83	1nue	A	GDPGUANOSINE-5'-DIPHOSPHATE	R - 105

Bibliographic annotations

Loop	PDB	Chain	Annotation	Residue
1nhk_R_82	1nhk   RefR.L.WILLIAMS,D.A.OREN,J.MUNOZ-DORADO,S.INOUYE,E.ARNOLD. CRYSTAL STRUCTURE OF MYXOCOCCUS XANTHUS NUCLEOSIDE DIPHOSPHATE KINASE AND ITS INTERACTION WITH A NUCLEOTIDE SUSTRATE AT 2.0 A RESOLUTION  J.MOL.BIOL. v.234;1230,1993	R	ATP BINDING RESIDUE	R - 87
1nhk_R_82	1nhk   RefR.L.WILLIAMS,D.A.OREN,J.MUNOZ-DORADO,S.INOUYE,E.ARNOLD. CRYSTAL STRUCTURE OF MYXOCOCCUS XANTHUS NUCLEOSIDE DIPHOSPHATE KINASE AND ITS INTERACTION WITH A NUCLEOTIDE SUSTRATE AT 2.0 A RESOLUTION  J.MOL.BIOL. v.234;1230,1993	R	SUBSTRATE BINDING RESIDUE	D - 88
1nhk_R_82	1nhk   RefR.L.WILLIAMS,D.A.OREN,J.MUNOZ-DORADO,S.INOUYE,E.ARNOLD. CRYSTAL STRUCTURE OF MYXOCOCCUS XANTHUS NUCLEOSIDE DIPHOSPHATE KINASE AND ITS INTERACTION WITH A NUCLEOTIDE SUSTRATE AT 2.0 A RESOLUTION  J.MOL.BIOL. v.234;1230,1993	R	SUBSTRATE BINDING RESIDUE	G - 91
1nhk_R_82	1nhk   RefR.L.WILLIAMS,D.A.OREN,J.MUNOZ-DORADO,S.INOUYE,E.ARNOLD. CRYSTAL STRUCTURE OF MYXOCOCCUS XANTHUS NUCLEOSIDE DIPHOSPHATE KINASE AND ITS INTERACTION WITH A NUCLEOTIDE SUSTRATE AT 2.0 A RESOLUTION  J.MOL.BIOL. v.234;1230,1993	R	ATP BINDING RESIDUE	R - 104

Clusters included in this Subclass

CLUSTER: HH.11.3

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