ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 8.11.1

Subclass Accession number: 1994
Subclass: 8.11.1

Type: AR beta-beta link
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 3.4.21 (>75 %)
GO : GO:0004252 (>50 %)  GO:0008236 (>50 %)
SCOP : 50493 (>75 %)  50494 (>75 %)  50514 (>75 %)  54636 (>50 %)  54637 (>50 %)  82636 (>50 %)

Number of loops: 3

Average sequence ID (%) : 15.6 +/- 16.2
Average RMSD (Å) : 0.800 +/- 0.265

Consensus geometry

d (Å): 15

delta (°): 45-90

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	phXhXhXXGpXh
(φψ)-conformation:	bbabpbppgpbb

Pattern:	x	[KRS]	[CF]	[KPT]	[GLV]	x	[IV]	[FK]	x	[G]	[DEQ]	x	[LV]	[DRT]	x
Conservation:	-1.000	0.009	0.564	-0.328	-0.935	-1.003	1.076	-0.038	-0.935	2.571	0.548	-0.800	0.535	-0.531	-0.733

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1iq6_A_82	1iq6	A	82	95	.SFKLPVFVGDEVTA	.EE-S--BTT-EEEE	.bxabxbxpgxxbbb
1ml9_A_161	1ml9	A	163	177	VKCPVNIKRGQFVDR	EE-SS-B-TT-EEEE	bbbabxbxpvxxabx
1pn2_A_225	1pn2	A	228	242	ARFTGIVFPGETLRV	EEE-S---TT-EEEE	bbxabxbbpgxbxbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ml9_A_161	1ml9	A	UNKUNKNOWN	C - 165
1ml9_A_161	1ml9	A	UNKUNKNOWN	P - 166
1ml9_A_161	1ml9	A	UNKUNKNOWN	V - 167
1pn2_A_225	1pn2	A	MSESELENOMETHIONINE	F - 230

Clusters included in this Subclass

CLUSTER: AR.8.28