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Information on SUBCLASS 0.1.2
Subclass Accession number: 2
Subclass: 0.1.2 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 26

Average sequence ID (%) : 9.2 +/- 13.4
Average RMSD (Å) : 0.481 +/- 0.136

Consensus geometry
d (Å): 5 delta (°): 0-45 theta (°): 45-90 rho (°): 90-135
Consensus Sequence: pXhX
(φψ)-conformation: aapb
Pattern: [adegnrs]x[acfilvy][cdeknqrsty][adegnqrt]xxx
Conservation:-0.160-0.5531.100-0.725-0.2681.977-0.616-0.755
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ac5_*_3881ac5   -393400DTIDNLKWHHHHH-EEaaaaaxbb
1b37_A_2841b37   A288295RAIYQFDMHHHHHSEEaaaaaxbb
1cb6_A_13351cb6   A13391346AARRARVVHHHHHSEEaaaaaxbx
1cq3_A_1141cq3   A119126SMIKDCEMHHHHH-EEaaaaapbb
1dmt_A_4621dmt   A470477EKALAIKEHHHHH-EEaaaaapxx
1dof_A_3061dof   A329336RVLKNVYIHHHHH-EEaaaaaxxx
1fcy_A_2561fcy   A274280RICTRYT.HHHHTEE.aaaaaxb.
1g2q_A_21g2q   A916ELKLALHQHHHHH-EEaaaaaxbx
1h54_A_4521h54   A463470FWADRVHFHHHHH-EEaaaaaxbx
1hy5_A_11591hy5   A11661173SAILNTPVHHHHHSEEaaaaapxb
1ile_*_4121ile   -417424RNNQEIHWHHHHHSEEaaaaapxx
1iq0_A_5251iq0   A540547NAYYNAREHHHHH-EEaaaaapbb
1iuq_A_1571iuq   A158165YIAENTIFHHHHH-EEaaaaapbx
1ji6_A_5591ji6   A559566SAALLQRYHHHHS-EEaaaaaxbb
1jkg_B_4481jkg   B450457LRFRLLKHHHHHHSEEaaaaaxxb
1jw9_B_221jw9   B2734EALKDSRVHHHHH-EEaaaaaxbb
1k7w_A_3301k7w   A350357GVISTLQIHHHHH-EEaaaaaxbx
1k8k_A_3881k8k   A389396EFYQVCHTHHHHHSEEaaaaaxxx
1lm5_A_27851lm5   A27872794DAINRSMVHHHHH-EEaaaaaxbx
1m8z_A_10911m8z   A10991106DEVCTMNDHHHHH-EEaaaaaxbb
1mdo_A_3491mdo   A353360WNSERICSHHHTTEEEaaaaaxbb
1n62_B_1261n62   B131138DAIELVEVHHHHH-EEaaaaaxbb
1o7f_A_3441o7f   A349356ELAGVLIFHHHHH-EEaaaaapbb
1q5n_A_3201q5n   A344351DVLKGMEVHHHHH-EEaaaaapbx
1qks_A_4641qks   A464471AEISGSVAHHHHT-EEaaaaabbx
1sbp_*_1521sbp   -161168ALFKNVEVHHHHTEEEaaaaaxab
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ac5_*_3881ac5   *     NAGN-ACETYL-D-GLUCOSAMINE W - 400
1fcy_A_2561fcy   A     LMUDODECYL-ALPHA-D-MALTOSIDE I - 260
1fcy_A_2561fcy   A     LMUDODECYL-ALPHA-D-MALTOSIDE L - 263
1fcy_A_2561fcy   A     LMUDODECYL-ALPHA-D-MALTOSIDE K - 264
1fcy_A_2561fcy   A     LMUDODECYL-ALPHA-D-MALTOSIDE A - 265
1fcy_A_2561fcy   A     LMUDODECYL-ALPHA-D-MALTOSIDE C - 267
1fcy_A_2561fcy   A     5646-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTALENE-2-CARBONYL)-NAPHTALENE-2-CARBOXYLIC ACID L - 268
1fcy_A_2561fcy   A     5646-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTALENE-2-CARBONYL)-NAPHTALENE-2-CARBOXYLIC ACID I - 270
1fcy_A_2561fcy   A     5646-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTALENE-2-CARBONYL)-NAPHTALENE-2-CARBOXYLIC ACID L - 271
1fcy_A_2561fcy   A     5646-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTALENE-2-CARBONYL)-NAPHTALENE-2-CARBOXYLIC ACID M - 272
1fcy_A_2561fcy   A     5646-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTALENE-2-CARBONYL)-NAPHTALENE-2-CARBOXYLIC ACID R - 274
1fcy_A_2561fcy   A     5646-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTALENE-2-CARBONYL)-NAPHTALENE-2-CARBOXYLIC ACID I - 275
1fcy_A_2561fcy   A     5646-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTALENE-2-CARBONYL)-NAPHTALENE-2-CARBOXYLIC ACID R - 278
1hy5_A_11591hy5   A     MSESELENOMETHIONINE L - 1161
1hy5_A_11591hy5   A     MSESELENOMETHIONINE Q - 1162
1hy5_A_11591hy5   A     MSESELENOMETHIONINE A - 1165
1hy5_A_11591hy5   A     MSESELENOMETHIONINE S - 1166
1hy5_A_11591hy5   A     MSESELENOMETHIONINE A - 1167
1hy5_A_11591hy5   A     MSESELENOMETHIONINE I - 1168
1hy5_A_11591hy5   A     MSESELENOMETHIONINE L - 1169
1hy5_A_11591hy5   A     MSESELENOMETHIONINE N - 1170
1iuq_A_1571iuq   A     MSESELENOMETHIONINE V - 166
1k7w_A_3301k7w   A     AS1ARGININOSUCCINATE D - 330
1k7w_A_3301k7w   A     AS1ARGININOSUCCINATE K - 331
1mdo_A_3491mdo   A     MSESELENOMETHIONINE T - 351
1mdo_A_3491mdo   A     MSESELENOMETHIONINE E - 352
1mdo_A_3491mdo   A     MSESELENOMETHIONINE N - 354
1mdo_A_3491mdo   A     MSESELENOMETHIONINE S - 355
1mdo_A_3491mdo   A     MSESELENOMETHIONINE I - 358
1mdo_A_3491mdo   A     MSESELENOMETHIONINE C - 359
1mdo_A_3491mdo   A     MSESELENOMETHIONINE L - 361

Clusters included in this Subclass
CLUSTER: HE.0.2
CLUSTER: HE.1.6