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Information on SUBCLASS 1.1.17
Subclass Accession number: 2041
Subclass: 1.1.17 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 8

Average sequence ID (%) : 7.9 +/- 10.9
Average RMSD (Å) : 0.475 +/- 0.219

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 45-90 rho (°): 180-225
Consensus Sequence: hhpXX
(φψ)-conformation: aapaa
Pattern: xx[CILW]x[DNQS]xxxxx
Conservation:-0.634-0.5121.335-0.6922.214-0.163-0.676-0.097-0.8240.050
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a26_*_6671a26   -674683KMIFDVESMKHHHT-HHHHHaaaaxaaaaa
1byb_*_4231byb   -423432DDLLQKSNFNHHHHSHHHHHaaaapaaaaa
1mvl_A_1431mvl   A144153LMWNNPFTERHHHHSHHHHHaaaaxaaaaa
1nnf_A_2391nnf   A247256DFLASKKGQEHHHHSHHHHHaaaaxaaaaa
1q4m_A_1631q4m   A166175HRWGNDGFKQHHHHSHHHHHaaaaxaaaaa
1q5n_A_121q5n   A1524TEIFSDRALVHHHTSHHHHHaaaaxaaaaa
1rtw_A_1501rtw   A154163NHWSSQEFGEHHHHSHHHHHaaaaxaaaaa
1s14_A_10861s14   A10901099ILCISVVNALHHHTSHHHHHaaaaxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1mvl_A_1431mvl   A     FMNFLAVIN MONONUCLEOTIDE M - 145
1q4m_A_1631q4m   A     MSESELENOMETHIONINE V - 180
1q4m_A_1631q4m   A     MSESELENOMETHIONINE I - 183
1q4m_A_1631q4m   A     MSESELENOMETHIONINE A - 184
1q4m_A_1631q4m   A     MSESELENOMETHIONINE C - 187
1rtw_A_1501rtw   A     MSESELENOMETHIONINE Q - 150
1rtw_A_1501rtw   A     MSESELENOMETHIONINE E - 151
1rtw_A_1501rtw   A     MSESELENOMETHIONINE F - 152
1rtw_A_1501rtw   A     MSESELENOMETHIONINE I - 153
1rtw_A_1501rtw   A     MSESELENOMETHIONINE H - 155
1rtw_A_1501rtw   A     MP5(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL DIHYDROGEN PHOSPHATE H - 155
1rtw_A_1501rtw   A     MSESELENOMETHIONINE W - 156
1rtw_A_1501rtw   A     MP5(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL DIHYDROGEN PHOSPHATE W - 156
1rtw_A_1501rtw   A     MP5(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL DIHYDROGEN PHOSPHATE F - 161
1rtw_A_1501rtw   A     MSESELENOMETHIONINE Y - 164
1rtw_A_1501rtw   A     MP5(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL DIHYDROGEN PHOSPHATE Y - 164
1rtw_A_1501rtw   A     MSESELENOMETHIONINE E - 169
1rtw_A_1501rtw   A     MSESELENOMETHIONINE N - 173
1rtw_A_1501rtw   A     MSESELENOMETHIONINE E - 177
1s14_A_10861s14   A     NOVNOVOBIOCIN A - 1086
1s14_A_10861s14   A     NOVNOVOBIOCIN I - 1090

Clusters included in this Subclass
CLUSTER: HH.2.69