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Information on SUBCLASS 1.1.39
Subclass Accession number: 2063
Subclass: 1.1.39 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : - (>50 %)  
GO : GO:0004497 (>75 %)  
SCOP : 48263 (>75 %)  48264 (>75 %)  48265 (>75 %)  
 Number of loops: 3

Average sequence ID (%) : 21.1 +/- 16.3
Average RMSD (Å) : 0.633 +/- 0.208

Consensus geometry
d (Å): 13 delta (°): 45-90 theta (°): 45-90 rho (°): 0-45
Consensus Sequence: XFXXp
(φψ)-conformation: aapaa
Pattern: [ENS][HW][KT][EKR][AL][HR][KNR][AIK][L][KLT][DP][GPS][F]xx[KQR][AKN][MV][KQR]
Conservation:-0.2941.553-0.0610.008-0.4260.524-0.068-1.3491.138-1.1220.607-0.7462.494-0.896-1.2730.158-0.8960.4910.158
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1jpz_A_941jpz   A95113NWKKAHNILLPSFSQQAMKHHHHHHHHHGGGGSHHHHHaaaaaaaaaaaaaxaaaaa
1lfk_A_951lfk   A95113EHTRLRRKLTPGFTLRKMQHHHHHHHHHGGGG-HHHHHaaaaaaaaaaaaaxaaaaa
1n97_A_841n97   A86104SWKEARKALKDPFLPKNVRHHHHHHHHH-GGGSHHHHHaaaaaaaaaaaaaxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1jpz_A_941jpz   A     HEMPROTOPORPHYRIN IX CONTAINING FE W - 96
1jpz_A_941jpz   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 100
1jpz_A_941jpz   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 107
1lfk_A_951lfk   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 96
1lfk_A_951lfk   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 100
1lfk_A_951lfk   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 103
1n97_A_841n97   A     EGLETHYLENE GLYCOL G - 84
1n97_A_841n97   A     HEMPROTOPORPHYRIN IX CONTAINING FE W - 87
1n97_A_841n97   A     EGLETHYLENE GLYCOL W - 87
1n97_A_841n97   A     EGLETHYLENE GLYCOL K - 88
1n97_A_841n97   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 91
1n97_A_841n97   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 98
1n97_A_841n97   A     EGLETHYLENE GLYCOL P - 100
1n97_A_841n97   A     EGLETHYLENE GLYCOL K - 101
1n97_A_841n97   A     EGLETHYLENE GLYCOL N - 102
1n97_A_841n97   A     EGLETHYLENE GLYCOL R - 104

Clusters included in this Subclass
CLUSTER: HH.4.262