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Information on SUBCLASS 1.2.5
Subclass Accession number: 2083
Subclass: 1.2.5 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : - (>50 %)  
 Number of loops: 14

Average sequence ID (%) : 18.8 +/- 18.0
Average RMSD (Å) : 0.557 +/- 0.271

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXpPX
(φψ)-conformation: aabaa
Pattern: [ADEGNQST]x[ACLVW]x[aeknqrs][dehknqry][NP][adegs]x[ailmw][DHKPRT][adeknqrt][AFGILMVY]
Conservation:-0.038-0.895-0.041-0.311-0.431-0.1263.232-0.027-0.411-0.272-0.047-0.379-0.254
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a53_*_2341a53   -234246SSLMRNPEKIKEFHHHHH-TTHHHHHaaaaabaaaaaaa
1b79_A_291b79   A3850GGLMLDNERWDDVHHHHH-GGGHHHHaaaaabaaaaaaa
1cpt_*_2871cpt   -291303ALAKSDPALIPRLHHHHH-GGGHHHHaaaaabaaaaaaa
1dz4_A_2681dz4   A272284QELIQRPERIPAAHHHHH-GGGHHHHaaaaabaaaaaaa
1eup_A_2611eup   A265277ALVRADPSALPNAHHHHH-GGGHHHHaaaaabaaaaaaa
1fx2_A_9101fx2   A912924ALWAAHPDLMPDAHHHHH-TTTHHHHaaaaabaaaaaaa
1gwe_A_1641gwe   A169181DFWTNNPESAHQVHHHHT-GGGHHHHaaaaabwaaaaaa
1h6k_A_611h6k   A7486TVARLLPEKLTIYHHHHH-GGGHHHHaaaaabaaaaaaa
1jkv_A_881jkv   A89101EDLKRDPSLATTMHHHHH-TTHHHHHaaaaabaaaaaaa
1n40_A_2531n40   A257269NLLHEKPELIPAGHHHHH-GGGHHHHaaaaabaaaaaaa
1oyz_A_1051oyz   A117129QRCKKNPIYSPKIHHHHH-GGGHHHHaaaaabaaaaaaa
1p80_A_2371p80   A241253DYVSLQPETLHNVHHHHH-GGGHHHHaaaaabaaaaaaa
1q3e_A_6081q3e   A613625EVLEEYPMMRRAFHHHHHSGGGHHHHaaaaabaaaaaaa
1q5d_A_2741q5d   A278290ELVKAEPGLMRNAHHHHH-GGGHHHHaaaaabaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a53_*_2341a53   *     IGPINDOLE-3-GLYCEROL PHOSPHATE S - 234
1a53_*_2341a53   *     IGPINDOLE-3-GLYCEROL PHOSPHATE S - 235
1cpt_*_2871cpt   *     HEMPROTOPORPHYRIN IX CONTAINING FE V - 308
1dz4_A_2681dz4   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL P - 268
1dz4_A_2681dz4   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL E - 269
1dz4_A_2681dz4   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL R - 271
1dz4_A_2681dz4   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL Q - 272
1dz4_A_2681dz4   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL I - 275
1dz4_A_2681dz4   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL Q - 276
1dz4_A_2681dz4   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 289
1eup_A_2611eup   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 282
1n40_A_2531n40   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 274
1oyz_A_1051oyz   A     MSESELENOMETHIONINE V - 107
1oyz_A_1051oyz   A     MSESELENOMETHIONINE R - 108
1oyz_A_1051oyz   A     MSESELENOMETHIONINE A - 111
1q3e_A_6081q3e   A     PCGCYCLIC GUANOSINE MONOPHOSPHATE V - 628
1q3e_A_6081q3e   A     PCGCYCLIC GUANOSINE MONOPHOSPHATE D - 631
1q3e_A_6081q3e   A     PCGCYCLIC GUANOSINE MONOPHOSPHATE R - 632
1q3e_A_6081q3e   A     PCGCYCLIC GUANOSINE MONOPHOSPHATE L - 633
1q5d_A_2741q5d   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 295

Clusters included in this Subclass
CLUSTER: HH.3.78
CLUSTER: HH.4.54
CLUSTER: HH.5.24