Logo
Information on SUBCLASS 1.2.7
Subclass Accession number: 2085
Subclass: 1.2.7 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0005344 (>75 %)  
SCOP : 46457 (>75 %)  46458 (>75 %)  46463 (>75 %)  
 Number of loops: 13

Average sequence ID (%) : 14.9 +/- 17.5
Average RMSD (Å) : 0.562 +/- 0.145

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 90-135 rho (°): 180-225
Consensus Sequence: XXcXp
(φψ)-conformation: aabaa
Pattern: [ehkqrsy]xxx[adenqs][dekn][ekpst][deqrst][fl][acflpv][adeknqst][dhknqrs]
Conservation:0.002-1.266-0.433-0.922-0.3431.4601.8680.1861.089-1.091-0.444-0.106
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a79_A_711a79   A7788YARNVEERLCLKHHHHH-TTHHHHaaaaabaaaaaa
1ddz_A_1131ddz   A124135EMLKQDPEFFNRHHHHH-TTHHHHaaaaabaaaaaa
1ddz_A_3671ddz   A378389KMLKQDPQFFSNHHHHH-TTHHHHaaaaabaaaaaa
1ez0_A_2641ez0   A265276SAMRAKADLADQHHHHH-TTHHHHaaaaabaaaaaa
1gvo_A_3241gvo   A324335RDYIANPDLVARHHHHH-TTHHHHaaaaabaaaaaa
1hlb_*_141hlb   -2637QLMRNKTSFVTDHHHHH-TTHHHHaaaaabaaaaaa
1iat_A_251iat   A2738RLFDANKDRFNHHHHHH-TTHHHHaaaaabaaaaaa
1k9x_A_4211k9x   A436447HIKKDIPDFEEKHHHTTSTTHHHHaaaaabaaaaaa
1o94_A_3221o94   A322333RPSIADPFLPQKHHHHH-TTHHHHaaaaabaaaaaa
1oyb_*_3481oyb   -348359RFFISNPDLVDRHHHHH-TTHHHHaaaaabaaaaaa
1pmi_*_2321pmi   -234245VFKDIDSRLPELHHHTT-TTHHHHaaaaabaaaaaa
1qo2_A_1031qo2   A103114SKVLEDPSFLKSHHHHH-TTHHHHaaaaabaaaaaa
1scz_A_3801scz   A391402KELLEDPTRLLLHHHHH-TTHHHHaaaaabaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a79_A_711a79   A     AUGOLD ION Y - 75
1a79_A_711a79   A     AUGOLD ION R - 79
1a79_A_711a79   A     AUGOLD ION L - 85
1a79_A_711a79   A     AUGOLD ION C - 86
1a79_A_711a79   A     AUGOLD ION L - 87
1a79_A_711a79   A     AUGOLD ION Y - 89
1a79_A_711a79   A     AUGOLD ION L - 90
1gvo_A_3241gvo   A     FMNFLAVIN MONONUCLEOTIDE R - 324
1gvo_A_3241gvo   A     FMNFLAVIN MONONUCLEOTIDE D - 325
1gvo_A_3241gvo   A     FMNFLAVIN MONONUCLEOTIDE I - 327
1hlb_*_141hlb   *     HEMPROTOPORPHYRIN IX CONTAINING FE F - 39
1hlb_*_141hlb   *     HEMPROTOPORPHYRIN IX CONTAINING FE I - 42
1hlb_*_141hlb   *     HEMPROTOPORPHYRIN IX CONTAINING FE F - 43
1iat_A_251iat   A     SULSULFATE ANION R - 27
1o94_A_3221o94   A     FMNFLAVIN MONONUCLEOTIDE R - 322
1o94_A_3221o94   A     SF4IRON/SULFUR CLUSTER R - 322
1o94_A_3221o94   A     FMNFLAVIN MONONUCLEOTIDE P - 323
1o94_A_3221o94   A     SF4IRON/SULFUR CLUSTER P - 323
1o94_A_3221o94   A     FMNFLAVIN MONONUCLEOTIDE I - 325
1o94_A_3221o94   A     SF4IRON/SULFUR CLUSTER I - 325
1o94_A_3221o94   A     SF4IRON/SULFUR CLUSTER A - 326
1oyb_*_3481oyb   *     FMNFLAVIN MONONUCLEOTIDE R - 348
1oyb_*_3481oyb   *     FMNFLAVIN MONONUCLEOTIDE F - 349
1oyb_*_3481oyb   *     FMNFLAVIN MONONUCLEOTIDE F - 350
1oyb_*_3481oyb   *     FMNFLAVIN MONONUCLEOTIDE I - 351

Clusters included in this Subclass
CLUSTER: HH.2.98
CLUSTER: HH.3.50
CLUSTER: HH.4.40