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PDB code:

Information on SUBCLASS 1.2.11

Subclass Accession number: 2089 Subclass: 1.2.11 Type: HH alpha-alpha DB: ArchDB40 Image coordinates: Consensus coordinates:

Number of loops: 11 Average sequence ID (%) : 12.1 +/- 13.6 Average RMSD (Å) : 0.518 +/- 0.166 Consensus geometry d (Å): 7 delta (°): 45-90 theta (°): 90-135 rho (°): 90-135

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1f0i_A_314	1f0i	A	315	326	DYDTVNPEESAL	HHHHH-HHHHHH	aaaaabaaaaaa
1fxx_A_327	1fxx	A	335	346	KILRENPQVREK	HHHHH-THHHHH	aaaaabaaaaaa
1h6g_A_486	1h6g	A	502	513	VDDITSIDDFLA	HHHHH-SHHHHH	aaaaabaaaaaa
1i5z_A_99	1i5z	A	104	115	QLIQVNPDILMR	HHHHH-THHHHH	aaaaabwaaaaa
1izo_A_247	1izo	A	256	267	LALHEHPKYKEW	HHHHHSTHHHHH	aaaaabaaaaaa
1n69_A_2	1n69	A	16	27	TAVRTNSTFVQA	HHHHH-TTHHHH	aaaaabaaaaaa
1q9i_A_423	1q9i	A	424	435	SVRKSLCKIDKY	HHHHH-TTHHHH	aaaaabaaaaaa
1qb2_A_393	1qb2	A	394	405	KVFSKQPGRIQR	HHHHHSTHHHHH	aaaaabaaaaaa
1t7p_A_545	1t7p	A	554	565	KFLENTPAIAAL	HHHHHSTHHHHH	aaaaabaaaaaa
1thf_D_104	1thf	D	104	115	TAAVENPSLITQ	HHHHH-THHHHH	aaaaabaaaaaa
2mas_A_130	2mas	A	134	145	MAARLEPRIVDR	HHHHH-THHHHH	aaaaabaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1h6g_A_486	1h6g	A	MSESELENOMETHIONINE	L - 486
1h6g_A_486	1h6g	A	CACALCIUM ION	L - 486
1h6g_A_486	1h6g	A	MSESELENOMETHIONINE	F - 487
1h6g_A_486	1h6g	A	CACALCIUM ION	F - 487
1h6g_A_486	1h6g	A	MSESELENOMETHIONINE	K - 488
1h6g_A_486	1h6g	A	CACALCIUM ION	K - 488
1h6g_A_486	1h6g	A	MSESELENOMETHIONINE	E - 489
1h6g_A_486	1h6g	A	MSESELENOMETHIONINE	Q - 494
1h6g_A_486	1h6g	A	CACALCIUM ION	D - 500
1h6g_A_486	1h6g	A	CACALCIUM ION	A - 501
1h6g_A_486	1h6g	A	CACALCIUM ION	D - 503
1h6g_A_486	1h6g	A	CACALCIUM ION	D - 504
1h6g_A_486	1h6g	A	MSESELENOMETHIONINE	I - 508
1h6g_A_486	1h6g	A	CACALCIUM ION	D - 510
1h6g_A_486	1h6g	A	MPD2-METHYL-2,4-PENTANEDIOL	L - 520
1h6g_A_486	1h6g	A	MPD2-METHYL-2,4-PENTANEDIOL	V - 523
1h6g_A_486	1h6g	A	MPD2-METHYL-2,4-PENTANEDIOL	N - 524
1h6g_A_486	1h6g	A	MPD2-METHYL-2,4-PENTANEDIOL	V - 527
1h6g_A_486	1h6g	A	MSESELENOMETHIONINE	L - 530
1h6g_A_486	1h6g	A	CACALCIUM ION	Q - 531
1i5z_A_99	1i5z	A	CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE	Y - 99
1i5z_A_99	1i5z	A	TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL	V - 108
1i5z_A_99	1i5z	A	TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL	N - 109
1i5z_A_99	1i5z	A	CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE	R - 123
1i5z_A_99	1i5z	A	CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE	L - 124
1i5z_A_99	1i5z	A	CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE	Q - 125
1i5z_A_99	1i5z	A	TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL	V - 126
1i5z_A_99	1i5z	A	CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE	T - 127
1i5z_A_99	1i5z	A	CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE	S - 128
1i5z_A_99	1i5z	A	TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL	E - 129
1i5z_A_99	1i5z	A	TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL	K - 130
1i5z_A_99	1i5z	A	TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL	V - 131
1i5z_A_99	1i5z	A	TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL	N - 133
1i5z_A_99	1i5z	A	TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL	L - 134
1izo_A_247	1izo	A	HEMPROTOPORPHYRIN IX CONTAINING FE	I - 247
1izo_A_247	1izo	A	HEMPROTOPORPHYRIN IX CONTAINING FE	S - 248
1izo_A_247	1izo	A	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 250
1n69_A_2	1n69	A	PEHDI-STEAROYL-3-SN-PHOSPHATIDYLETHANOLAMINE	V - 32
1n69_A_2	1n69	A	PEHDI-STEAROYL-3-SN-PHOSPHATIDYLETHANOLAMINE	E - 35
1q9i_A_423	1q9i	A	HEMPROTOPORPHYRIN IX CONTAINING FE	K - 431
1q9i_A_423	1q9i	A	HEMPROTOPORPHYRIN IX CONTAINING FE	D - 433
1q9i_A_423	1q9i	A	HEMPROTOPORPHYRIN IX CONTAINING FE	K - 434
1q9i_A_423	1q9i	A	HEMPROTOPORPHYRIN IX CONTAINING FE	Y - 435
1q9i_A_423	1q9i	A	HEMPROTOPORPHYRIN IX CONTAINING FE	G - 437
1q9i_A_423	1q9i	A	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 438
1thf_D_104	1thf	D	PO4PHOSPHATE ION	T - 104
1thf_D_104	1thf	D	PO4PHOSPHATE ION	A - 105

Clusters included in this Subclass

CLUSTER: HH.1.41

CLUSTER: HH.3.47

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