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PDB code:

Information on SUBCLASS 1.2.13

Subclass Accession number: 2091 Subclass: 1.2.13 Type: HH alpha-alpha DB: ArchDB40 Image coordinates: Consensus coordinates:

Number of loops: 9 Average sequence ID (%) : 16.9 +/- 16.2 Average RMSD (Å) : 0.600 +/- 0.187 Consensus geometry d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a79_A_71	1a79	A	76	89	EYARNVEERLCLKY	HHHHHH-TTHHHHH	aaaaaabaaaaaaa
1fx2_A_910	1fx2	A	911	924	TALWAAHPDLMPDA	HHHHHH-TTTHHHH	aaaaaabaaaaaaa
1gwu_A_14	1gwu	A	23	36	VNELRSDPRIAASI	HHHHHH-TTHHHHH	aaaaaabaaaaaaa
1izn_B_21	1izn	B	26	39	SDLIDLVPSLCEDL	HHHHHH-GGGHHHH	aaaaaabaaaaaaa
1jkv_A_88	1jkv	A	88	101	PEDLKRDPSLATTM	HHHHHH-TTHHHHH	aaaaaabaaaaaaa
1jl7_A_24	1jl7	A	32	45	SKFISAHPEMAAVF	HHHHHH-GGGHHHH	aaaaaabaaaaaaa
1ll2_A_71	1ll2	A	71	84	HLTLMKRPELGVTL	HHHHHH-GGGHHHH	aaaaaabaaaaaaa
1lp1_A_24	1lp1	A	31	44	IFSLWDDPSQSANL	HHHHHH-GGGHHHH	aaaaaabaaaaaaa
1v8c_A_25	1v8c	A	30	43	ENLVRAYPALKEEL	HHHHHH-GGGHHHH	aaaaaabaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1a79_A_71	1a79	A	AUGOLD ION	Y - 75
1a79_A_71	1a79	A	AUGOLD ION	R - 79
1a79_A_71	1a79	A	AUGOLD ION	L - 85
1a79_A_71	1a79	A	AUGOLD ION	C - 86
1a79_A_71	1a79	A	AUGOLD ION	L - 87
1a79_A_71	1a79	A	AUGOLD ION	Y - 89
1a79_A_71	1a79	A	AUGOLD ION	L - 90
1gwu_A_14	1gwu	A	HEMPROTOPORPHYRIN IX CONTAINING FE	R - 31
1gwu_A_14	1gwu	A	CACALCIUM ION	R - 31
1gwu_A_14	1gwu	A	HEMPROTOPORPHYRIN IX CONTAINING FE	A - 33
1gwu_A_14	1gwu	A	HEMPROTOPORPHYRIN IX CONTAINING FE	A - 34
1gwu_A_14	1gwu	A	CACALCIUM ION	A - 34
1gwu_A_14	1gwu	A	HEMPROTOPORPHYRIN IX CONTAINING FE	S - 35
1gwu_A_14	1gwu	A	CACALCIUM ION	S - 35
1gwu_A_14	1gwu	A	HEMPROTOPORPHYRIN IX CONTAINING FE	I - 36
1gwu_A_14	1gwu	A	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 37
1gwu_A_14	1gwu	A	CACALCIUM ION	L - 37
1gwu_A_14	1gwu	A	HEMPROTOPORPHYRIN IX CONTAINING FE	R - 38
1gwu_A_14	1gwu	A	CACALCIUM ION	R - 38
1gwu_A_14	1gwu	A	ACTACETATE ION	R - 38
1gwu_A_14	1gwu	A	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 41
1gwu_A_14	1gwu	A	CACALCIUM ION	F - 41
1gwu_A_14	1gwu	A	ACTACETATE ION	F - 41
1gwu_A_14	1gwu	A	HEMPROTOPORPHYRIN IX CONTAINING FE	H - 42
1gwu_A_14	1gwu	A	CACALCIUM ION	H - 42
1gwu_A_14	1gwu	A	ACTACETATE ION	H - 42
1gwu_A_14	1gwu	A	CACALCIUM ION	D - 43
1gwu_A_14	1gwu	A	CACALCIUM ION	C - 44
1jl7_A_24	1jl7	A	CNCYANIDE GROUP	L - 31
1jl7_A_24	1jl7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 34
1jl7_A_24	1jl7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	M - 41
1jl7_A_24	1jl7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	V - 44
1jl7_A_24	1jl7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 45
1jl7_A_24	1jl7	A	CNCYANIDE GROUP	F - 45
1ll2_A_71	1ll2	A	UPGURIDINE-5'-DIPHOSPHATE-GLUCOSE	V - 82
1ll2_A_71	1ll2	A	UPGURIDINE-5'-DIPHOSPHATE-GLUCOSE	K - 86

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gwu_A_14	1gwu	A	HEMHEM BINDING SITE FOR CHAIN A	R - 31
1gwu_A_14	1gwu	A	HEMHEM BINDING SITE FOR CHAIN A	A - 34
1gwu_A_14	1gwu	A	HEMHEM BINDING SITE FOR CHAIN A	S - 35
1gwu_A_14	1gwu	A	HEMHEM BINDING SITE FOR CHAIN A	R - 38
1gwu_A_14	1gwu	A	HEMHEM BINDING SITE FOR CHAIN A	F - 41
1gwu_A_14	1gwu	A	AC1ACT BINDING SITE FOR CHAIN A	H - 42
1gwu_A_14	1gwu	A	CA1CA BINDING SITE FOR CHAIN A	D - 43

Clusters included in this Subclass

CLUSTER: HH.3.133

CLUSTER: HH.3.161

CLUSTER: HH.4.61

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