Information on SUBCLASS 0.1.21 |
Subclass Accession number: 21
Subclass: 0.1.21 Type: HE alpha-beta DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 10.0 +/- 16.5 Average RMSD (Å) : 0.540 +/- 0.152 Consensus geometry
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Consensus Sequence: | XXhX |
(φψ)-conformation: | aabb |
Pattern: | [DPV] | x | x | x | x | x | [flw] | x | x |
Conservation: | 1.625 | -1.382 | -0.975 | 0.522 | -0.556 | -0.848 | 0.420 | 0.201 | 0.992 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1m98_A_212 | 1m98 | A | 213 | 221 | DNLISLFAE | HHHHTTEEE | aaaaaaxxa |
1ocv_A_23 | 1ocv | A | 24 | 32 | DGIVALFAD | HHHHTTEEE | aaaaaaxxa |
1oh4_A_16 | 1oh4 | A | 16 | 24 | PEEVKNWWN | HHHHTTEEE | aaaaaabbx |
1r2j_A_219 | 1r2j | A | 245 | 253 | VAHARTREQ | HHHHTT-EE | aaaaaaxbb |
1uzb_A_500 | 1uzb | A | 501 | 509 | DYLRLFLEM | HHHHTTEEE | aaaaaabbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1m98_A_212 | 1m98 | A | HEQ3-[18-(4-HYDROXY-2,6,6-TRIMETHYL-CYCLOHEX-1-ENYL)-3,7, 12,16-TETRAMETHYL-OCTADECA-1,3,5,7,9,11,13,15, 17-NONAENYL]-2,4,4-TRIMETHYL-CYCLOHEX-2-ENONE | L - 225 |
1m98_A_212 | 1m98 | A | HEQ3-[18-(4-HYDROXY-2,6,6-TRIMETHYL-CYCLOHEX-1-ENYL)-3,7, 12,16-TETRAMETHYL-OCTADECA-1,3,5,7,9,11,13,15, 17-NONAENYL]-2,4,4-TRIMETHYL-CYCLOHEX-2-ENONE | Q - 226 |
1oh4_A_16 | 1oh4 | A | GOLGLYCEROL | P - 16 |
1oh4_A_16 | 1oh4 | A | GOLGLYCEROL | E - 18 |
1oh4_A_16 | 1oh4 | A | GOLGLYCEROL | V - 19 |
1oh4_A_16 | 1oh4 | A | GOLGLYCEROL | K - 20 |
1oh4_A_16 | 1oh4 | A | GOLGLYCEROL | N - 21 |
1oh4_A_16 | 1oh4 | A | GOLGLYCEROL | W - 22 |
1oh4_A_16 | 1oh4 | A | GOLGLYCEROL | W - 23 |
1oh4_A_16 | 1oh4 | A | GOLGLYCEROL | N - 24 |
1oh4_A_16 | 1oh4 | A | BMABETA-D-MANNOSE | S - 25 |
1oh4_A_16 | 1oh4 | A | BMABETA-D-MANNOSE | G - 26 |
1oh4_A_16 | 1oh4 | A | BMABETA-D-MANNOSE | T - 27 |
1oh4_A_16 | 1oh4 | A | BMABETA-D-MANNOSE | W - 28 |
1oh4_A_16 | 1oh4 | A | GLAALPHA D-GALACTOSE | W - 28 |
1uzb_A_500 | 1uzb | A | MRD(4R)-2-METHYLPENTANE-2,4-DIOL | L - 500 |
1uzb_A_500 | 1uzb | A | MRD(4R)-2-METHYLPENTANE-2,4-DIOL | K - 510 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1oh4_A_16 | 1oh4 | A | AC9GOL BINDING SITE FOR CHAIN A | E - 18 |
1oh4_A_16 | 1oh4 | A | AC8GOL BINDING SITE FOR CHAIN A | W - 22 |
1oh4_A_16 | 1oh4 | A | AC6GLA BINDING SITE FOR CHAIN A | W - 28 |
1uzb_A_500 | 1uzb | A | AC2MRD BINDING SITE FOR CHAIN A | L - 500 |
1uzb_A_500 | 1uzb | A | AC6MRD BINDING SITE FOR CHAIN B | K - 510 |
Clusters included in this Subclass |
CLUSTER: HE.2.39 |