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Information on SUBCLASS 0.1.21
Subclass Accession number: 21
Subclass: 0.1.21 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 10.0 +/- 16.5
Average RMSD (Å) : 0.540 +/- 0.152

Consensus geometry
d (Å): 7 delta (°): 0-45 theta (°): 45-90 rho (°): 135-180
Consensus Sequence: XXhX
(φψ)-conformation: aabb
Pattern: [DPV]xxxxx[flw]xx
Conservation:1.625-1.382-0.9750.522-0.556-0.8480.4200.2010.992
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1m98_A_2121m98   A213221DNLISLFAEHHHHTTEEEaaaaaaxxa
1ocv_A_231ocv   A2432DGIVALFADHHHHTTEEEaaaaaaxxa
1oh4_A_161oh4   A1624PEEVKNWWNHHHHTTEEEaaaaaabbx
1r2j_A_2191r2j   A245253VAHARTREQHHHHTT-EEaaaaaaxbb
1uzb_A_5001uzb   A501509DYLRLFLEMHHHHTTEEEaaaaaabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1m98_A_2121m98   A     HEQ3-[18-(4-HYDROXY-2,6,6-TRIMETHYL-CYCLOHEX-1-ENYL)-3,7, 12,16-TETRAMETHYL-OCTADECA-1,3,5,7,9,11,13,15, 17-NONAENYL]-2,4,4-TRIMETHYL-CYCLOHEX-2-ENONE L - 225
1m98_A_2121m98   A     HEQ3-[18-(4-HYDROXY-2,6,6-TRIMETHYL-CYCLOHEX-1-ENYL)-3,7, 12,16-TETRAMETHYL-OCTADECA-1,3,5,7,9,11,13,15, 17-NONAENYL]-2,4,4-TRIMETHYL-CYCLOHEX-2-ENONE Q - 226
1oh4_A_161oh4   A     GOLGLYCEROL P - 16
1oh4_A_161oh4   A     GOLGLYCEROL E - 18
1oh4_A_161oh4   A     GOLGLYCEROL V - 19
1oh4_A_161oh4   A     GOLGLYCEROL K - 20
1oh4_A_161oh4   A     GOLGLYCEROL N - 21
1oh4_A_161oh4   A     GOLGLYCEROL W - 22
1oh4_A_161oh4   A     GOLGLYCEROL W - 23
1oh4_A_161oh4   A     GOLGLYCEROL N - 24
1oh4_A_161oh4   A     BMABETA-D-MANNOSE S - 25
1oh4_A_161oh4   A     BMABETA-D-MANNOSE G - 26
1oh4_A_161oh4   A     BMABETA-D-MANNOSE T - 27
1oh4_A_161oh4   A     BMABETA-D-MANNOSE W - 28
1oh4_A_161oh4   A     GLAALPHA D-GALACTOSE W - 28
1uzb_A_5001uzb   A     MRD(4R)-2-METHYLPENTANE-2,4-DIOL L - 500
1uzb_A_5001uzb   A     MRD(4R)-2-METHYLPENTANE-2,4-DIOL K - 510
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1oh4_A_161oh4   A AC9GOL BINDING SITE FOR CHAIN AE - 18
1oh4_A_161oh4   A AC8GOL BINDING SITE FOR CHAIN AW - 22
1oh4_A_161oh4   A AC6GLA BINDING SITE FOR CHAIN AW - 28
1uzb_A_5001uzb   A AC2MRD BINDING SITE FOR CHAIN AL - 500
1uzb_A_5001uzb   A AC6MRD BINDING SITE FOR CHAIN BK - 510

Clusters included in this Subclass
CLUSTER: HE.2.39