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Information on SUBCLASS 1.2.24
Subclass Accession number: 2102
Subclass: 1.2.24 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0005344 (>50 %)  
SCOP : 46457 (>50 %)  46458 (>50 %)  46463 (>50 %)  
 Number of loops: 4

Average sequence ID (%) : 12.5 +/- 14.0
Average RMSD (Å) : 0.475 +/- 0.236

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: pXpXp
(φψ)-conformation: aabaa
Pattern: [IVW]x[DGQ][FIL][AEQT][EHS]x[DNY]x[EKNT][FKL]x
Conservation:0.614-0.4090.3371.496-0.4111.723-0.6980.464-1.8640.004-0.639-0.618
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1e4m_M_501e4m   M5162WDGFTHRYPNKSHHHHHHHSHHHHaaaaaaabaaaa
1gz3_A_781gz3   A8596IMGIQERNEKLFHHHHHTT-HHHHaaaaaaabaaaa
1nd7_A_6931nd7   A693704IKDLESIDTEFYHHHHHTT-HHHHaaaaaaabaaaa
1p80_A_5371p80   A544555VDQLAHIDLTLAHHHHHTT-HHHHaaaaaaabaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e4m_M_501e4m   M     GOLGLYCEROL I - 50
1e4m_M_501e4m   M     GOLGLYCEROL W - 51
1e4m_M_501e4m   M     GOLGLYCEROL D - 52
1e4m_M_501e4m   M     GOLGLYCEROL G - 53
1e4m_M_501e4m   M     GOLGLYCEROL F - 54
1e4m_M_501e4m   M     GOLGLYCEROL T - 55
1e4m_M_501e4m   M     ZNZINC ION H - 56
1e4m_M_501e4m   M     NAGN-ACETYL-D-GLUCOSAMINE R - 57
1e4m_M_501e4m   M     GOLGLYCEROL R - 57
1e4m_M_501e4m   M     NAGN-ACETYL-D-GLUCOSAMINE Y - 58
1e4m_M_501e4m   M     GOLGLYCEROL Y - 58
1e4m_M_501e4m   M     NAGN-ACETYL-D-GLUCOSAMINE P - 59
1e4m_M_501e4m   M     NAGN-ACETYL-D-GLUCOSAMINE N - 60
1e4m_M_501e4m   M     NAGN-ACETYL-D-GLUCOSAMINE K - 61
1gz3_A_781gz3   A     FUMFUMARIC ACID Y - 84
1gz3_A_781gz3   A     FUMFUMARIC ACID G - 87
1gz3_A_781gz3   A     FUMFUMARIC ACID I - 88
1gz3_A_781gz3   A     FUMFUMARIC ACID R - 91
1gz3_A_781gz3   A     FUMFUMARIC ACID N - 92
1gz3_A_781gz3   A     FUMFUMARIC ACID L - 95
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1e4m_M_501e4m   M ZNBZN BINDING SITE TOGETHER WITH THE SYMMETRY-RELATED EQUIVALENTS. ACTIVE SITE NUCLEOPHILE: GLU409 AT THE POSITION OF THE GENERAL ACID/BASE: GLN187H - 56
1gz3_A_781gz3   A AC4FUM BINDING SITE FOR CHAIN AR - 91

Clusters included in this Subclass
CLUSTER: HH.2.158
CLUSTER: HH.4.93