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Information on SUBCLASS 1.2.27
Subclass Accession number: 2105
Subclass: 1.2.27 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0005515 (>50 %)  
 Number of loops: 3

Average sequence ID (%) : 3.7 +/- 7.5
Average RMSD (Å) : 0.633 +/- 0.115

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: pXphX
(φψ)-conformation: aabaa
Pattern: [FPV]xx[QSY][FIL][KRS]x[ENQ][APV]x[FL][DST][QTY]x[LVY][DRY][FHK]x
Conservation:-1.205-1.5050.089-0.1521.0500.749-0.9041.351-0.303-0.9042.5000.599-0.3030.1480.299-1.054-0.303-0.152
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1n1c_A_361n1c   A4158FWEQLSLEANFTQSVDKIHHHHHHTSTTTHHHHHHHaaaaaaaxaaaaaaaaaa
1pb7_A_1801pb7   A181198VDIYFRRQVELSTMYRHMHHHHHHT-GGGHHHHHHHaaaaaaabaaaaaaaaaa
1vj5_A_3691vj5   A369386PLESIKANPVFDYQLYFQHHHHHHT-GGGHHHHHHHaaaaaaabaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1n1c_A_361n1c   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE A - 37
1n1c_A_361n1c   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE A - 38
1n1c_A_361n1c   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE F - 41
1n1c_A_361n1c   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE W - 42
1pb7_A_1801pb7   A     GLYGLYCINE S - 180
1pb7_A_1801pb7   A     GLYGLYCINE V - 181
1vj5_A_3691vj5   A     CIUN-CYCLOHEXYL-N'-(4-IODOPHENYL)UREA F - 379
1vj5_A_3691vj5   A     CIUN-CYCLOHEXYL-N'-(4-IODOPHENYL)UREA Y - 381
1vj5_A_3691vj5   A     CIUN-CYCLOHEXYL-N'-(4-IODOPHENYL)UREA Q - 382
1vj5_A_3691vj5   A     CIUN-CYCLOHEXYL-N'-(4-IODOPHENYL)UREA F - 385

Clusters included in this Subclass
CLUSTER: HH.6.122