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PDB code:

Information on SUBCLASS 1.2.28

Subclass Accession number: 2106 Subclass: 1.2.28 Type: HH alpha-alpha DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0016874 (>50 %)   SCOP : 53799 (>50 %)  53807 (>50 %)  53811 (>50 %)

Number of loops: 3 Average sequence ID (%) : 5.6 +/- 11.1 Average RMSD (Å) : 0.567 +/- 0.115 Consensus geometry d (Å): 11 delta (°): 0-45 theta (°): 90-135 rho (°): 135-180

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1h6d_A_247	1h6d	A	247	258	PAQQWRLRRELA	HHHHGGG-HHHH	aaaaaaabaaaa
1ipa_A_9	1ipa	A	12	23	KELARLLERKHR	HHHHGGGSHHHH	aaaaaaabaaaa
1kfs_A_491	1kfs	A	512	523	MWPDLQKHKGPL	HHHHTTS-HHHH	aaaaaaabaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1h6d_A_247	1h6d	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	P - 247
1h6d_A_247	1h6d	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	A - 248
1h6d_A_247	1h6d	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	Q - 249
1h6d_A_247	1h6d	A	GOLGLYCEROL	Q - 249
1h6d_A_247	1h6d	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	W - 251
1h6d_A_247	1h6d	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	R - 252
1h6d_A_247	1h6d	A	GOLGLYCEROL	R - 252
1h6d_A_247	1h6d	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	L - 257
1kfs_A_491	1kfs	A	ZNZINC ION	Y - 497
1kfs_A_491	1kfs	A	ZNZINC ION	A - 498
1kfs_A_491	1kfs	A	ZNZINC ION	D - 501
1kfs_A_491	1kfs	A	MGMAGNESIUM ION	D - 501
1kfs_A_491	1kfs	A	ZNZINC ION	A - 502

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1h6d_A_247	1h6d	A	AC2GOL BINDING SITE FOR CHAIN A	R - 252
1kfs_A_491	1kfs	A	EXOEXONUCLEASE ACTIVE SITE.	D - 501

Clusters included in this Subclass

CLUSTER: HH.5.231

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