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Information on SUBCLASS 1.2.35
Subclass Accession number: 2113
Subclass: 1.2.35 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0005489 (>50 %)  
SCOP : 46625 (>50 %)  46626 (>50 %)  46627 (>50 %)  
 Number of loops: 3

Average sequence ID (%) : 22.2 +/- 17.8
Average RMSD (Å) : 0.367 +/- 0.153

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 90-135 rho (°): 0-45
Consensus Sequence: XXcPp
(φψ)-conformation: aabaa
Pattern: xx[DSV]x[VY][LT][AT][DKN][P][KNQ][AEK][FY]
Conservation:-0.386-0.712-0.940-1.0540.296-0.2430.015-0.1992.422-0.142-0.4841.429
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1i8o_A_601i8o   A6273NIVPYLADPNAFHHHHHHH-HHHHaaaaaaabaaaa
1pmi_*_691pmi   -6980LRDLVTAKPQEYHHHHHHH-HHHHaaaaaaabaaaa
1ycc_*_611ycc   -6374NMSEYLTNPKKYHHHHHHH-HHHHaaaaaaabaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1i8o_A_601i8o   A     HECHEME C I - 63
1i8o_A_601i8o   A     HECHEME C Y - 66
1i8o_A_601i8o   A     NH3AMMONIA Y - 66
1i8o_A_601i8o   A     HECHEME C L - 67
1i8o_A_601i8o   A     NH3AMMONIA L - 67
1i8o_A_601i8o   A     SULSULFATE ANION D - 69
1i8o_A_601i8o   A     SULSULFATE ANION P - 70
1i8o_A_601i8o   A     NH3AMMONIA P - 70
1i8o_A_601i8o   A     SULSULFATE ANION N - 71
1i8o_A_601i8o   A     SULSULFATE ANION A - 72
1ycc_*_611ycc   *     HEMPROTOPORPHYRIN IX CONTAINING FE M - 64
1ycc_*_611ycc   *     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 67
1ycc_*_611ycc   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 68
1ycc_*_611ycc   *     TMLMETHYL PART OF N-TRIMETHYLLYSINE K - 72

Clusters included in this Subclass
CLUSTER: HH.0.40