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Information on SUBCLASS 1.3.1
Subclass Accession number: 2121
Subclass: 1.3.1 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 76

Average sequence ID (%) : 13.4 +/- 15.1
Average RMSD (Å) : 0.528 +/- 0.156

Consensus geometry
d (Å): 5 delta (°): 45-90 theta (°): 45-90 rho (°): 45-90
Consensus Sequence: XXchh
(φψ)-conformation: aalaa
Pattern: xxx[adegknqrst]x[adgknqr][afgilmvwy][afgilmpvy][adeknqrst]x
Conservation:-0.472-0.207-0.6670.162-0.0422.672-0.314-0.7200.254-0.665
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a9x_A_921a9x   A101110ELERQGVLEEHHHHTTHHHHaaaaavaaaa
1aco_*_3941aco   -399408TIERDGYAQVHHHHTTHHHHaaaaavaaaa
1b74_A_1151b74   A116125ATVKSGAYQRHHHHH-HHHHaaaaavaaaa
1bob_*_2591bob   -272281RLRKLGYDAVHHHHTTHHHHaaaaavaaaa
1brw_A_2891brw   A298307EAIRSGAAIAHHHHHTHHHHaaaaagaaaa
1cr1_A_3661cr1   A371380EIIENGKFDQHHHHHTHHHHaaaaavaaaa
1d3v_A_271d3v   A3039ALRKAGLVEKHHHHTTHHHHaaaaavaaaa
1dmh_A_711dmh   A7483LSPGLGFDHYHHHHTTHHHHaaaaavaaaa
1dxy_*_1021dxy   -114123LYLLRNMGKVHHHHTTHHHHaaaaalaaaa
1ebf_A_2121ebf   A212221RDDLNGLDVAHHHHT-HHHHaaaaavaaaa
1ee4_A_1631ee4   A168177VVVDADAVPLHHHHTTHHHHaaaaavaaaa
1ee4_A_2891ee4   A294303AVIDVRIPKRHHHHTTHHHHaaaaavaaaa
1ee4_A_3311ee4   A336345VVINAGVLPAHHHHTTHHHHaaaaavaaaa
1ee4_A_4721ee4   A476485FIEKAGGMEKHHHHTTHHHHaaaaavaaaa
1eer_A_911eer   A108117LLRALGAQKEHHHHTTHHHHaaaaavaaaa
1ei1_A_2801ei1   A296305YMDKEGYSKKHHHHTTHHHHaaaaaUaaaa
1f3v_A_801f3v   A8897RAYREGALRAHHHHTTHHHHaaaaavaaaa
1f61_A_3931f61   A393402HQREVGAGYFHHHHTTHHHHaaaaavaaaa
1fp1_D_361fp1   D4352AAIDLNLFEIHHHHTTHHHHaaaaalaaaa
1g2r_A_531g2r   A5867EAKKKKVFNRHHHHHTHHHHaaaaalaaaa
1gci_*_61gci   -716GISRVQAPAAHHHHTTHHHHaaaaavaaaa
1gdh_A_1021gdh   A114123LGSARRAGEGHHHHTTHHHHaaaaalaaaa
1gso_A_731gso   A7483APLVKGVVDTHHHHTTHHHHaaaaavaaaa
1hd7_A_721hd7   A7483AWIKKKGLDWHHHHTTHHHHaaaaavaaaa
1hrd_A_401hrd   A4150EYEEVALLERHHHHTTHHHHaaaaalaaaa
1iat_A_611iat   A7079LAKSRGVEAAHHHHTTHHHHaaaaavaaaa
1ii5_A_2011ii5   A210219NLLYSRVIAEHHHHTTHHHHaaaaavaaaa
1iq0_A_2401iq0   A242251DIVRAGLLQKHHHHTTHHHHaaaaavaaaa
1j1n_A_4591j1n   A469478QLKLRGLYQVHHHHTTHHHHaaaaavaaaa
1j9a_A_631j9a   A6877THSENGLIERHHHHHTHHHHaaaaagaaaa
1jdh_A_2251jdh   A230239AIFKSGGIPAHHHHTTHHHHaaaaavaaaa
1jdh_A_2691jdh   A272281AVRLAGGLQKHHHHHTHHHHaaaaavaaaa
1jdh_A_3091jdh   A314323IILASGGPQAHHHHTTHHHHaaaaavaaaa
1jdh_A_3531jdh   A356365AIVEAGGMQAHHHHTTHHHHaaaaagaaaa
1jdh_A_4321jdh   A437446MVCQVGGIEAHHHHTTHHHHaaaaavaaaa
1jdh_A_4781jdh   A484493AVRLHYGLPVHHHHTT-HHHaaaaalaaaa
1jdh_A_5241jdh   A526535PLREQGAIPRHHHHTTHHHHaaaaavaaaa
1jfl_A_1251jfl   A126135GTIVSGVYEKHHHHHTHHHHaaaaavaaaa
1jmj_A_1521jmj   A158167VHSILHFKDFHHHHTTHHHHaaaaavaaaa
1jv1_A_2261jv1   A229238ALAAQNIVEDHHHHTTHHHHaaaaalaaaa
1jyo_E_1221jyo   E124133KAADEGFINLHHHHTTHHHHaaaaavaaaa
1k5n_A_1381k5n   A146155KWEAARVAEQHHHHTTHHHHaaaaalaaaa
1k7c_A_451k7c   A4756SYTREGRFENHHHHTTHHHHaaaaavaaaa
1khd_A_3181khd   A327336ETIRSGTAFEHHHHHTHHHHaaaaavaaaa
1ktb_A_351ktb   A4453RIAEDGWRELHHHHSSHHHHaaaaavaaaa
1kte_*_821kte   -8796SMHKRGELLTHHHHHTHHHHaaaaavaaaa
1l3a_A_2241l3a   A238247MPYLLGWHTAHHHHTTHHHHaaaaavaaaa
1l5j_A_7421l5j   A747756QLTEEGYYSVHHHHTTHHHHaaaaavaaaa
1lst_*_2041lst   -216225ELRQDGTYDKHHHHTTHHHHaaaaavaaaa
1lw3_A_3791lw3   A382391NLESTHWLEHHHHHH-HHHHaaaaavaaaa
1m6y_A_2051m6y   A212221RIYVNRELENHHHHHTHHHHaaaaalaaaa
1mqi_A_2311mqi   A240249KLNEQGLLDKHHHHTTHHHHaaaaavaaaa
1mx3_A_1251mx3   A137146LNLYRRATWLHHHHH-HHHHaaaaalaaaa
1n4k_A_5041n4k   A509518LMREQNILKQHHHHTTHHHHaaaaavaaaa
1np3_A_1601np3   A167176YACGVGGGRTHHHHTTHHHHaaaaagaaaa
1np3_A_2681np3   A279288KRIQDGEYAKHHHHTTHHHHaaaaavaaaa
1o0w_A_911o0w   A97106VSRKMNLGKFHHHHTTHHHHaaaaalaaaa
1odz_A_3851odz   A386395ENINNGTLEDHHHHTSHHHHaaaaavaaaa
1ohw_A_3581ohw   A370379IIKREDLLSNHHHHTTHHHHaaaaalaaaa
1pb7_A_2611pb7   A270279KSHENGFMEDHHHHSSHHHHaaaaavaaaa
1pda_*_2831pda   -293302ELLNNGAREIHHHHTTHHHHaaaaagaaaa
1q7e_A_1421q7e   A145154AQAAGGAASTHHHHTTHHHHaaaaagaaaa
1qv9_A_1471qv9   A147156VLAATGVFRVHHHHTTHHHHaaaaavaaaa
1qzz_A_281qzz   A3544VAATLRLVDHHHHHTTHHHHaaaaalaaaa
1uas_A_251uas   A3443ALVNTGLAKLHHHHTSHHHHaaaaavaaaa
1uby_*_3091uby   -318327LYEAVGMRAAHHHHHTHHHHaaaaavaaaa
1uou_A_3231uou   A332341AALDDGSALGHHHHSSHHHHaaaaavaaaa
1upk_A_641upk   A7382ELYNSGLLSTHHHHHSHHHHaaaaavaaaa
1ux5_A_13781ux5   A13851394DLYEKGVLADHHHHTTHHHHaaaaavaaaa
1v8g_A_3001v8g   A309318EVLASGEAYLHHHHHTHHHHaaaaavaaaa
1wdn_A_1941wdn   A206215TLRENGTYNEHHHHTSHHHHaaaaavaaaa
2dkb_*_3082dkb   -320329VVQRDGLVARHHHHTTHHHHaaaaavaaaa
2nac_A_1472nac   A159168LSLVRNYLPSHHHHTTHHHHaaaaalaaaa
2oat_A_3272oat   A339348VLEEENLAENHHHHTTHHHHaaaaalaaaa
4ubp_C_4974ubp   C498507SSIQQGVPAKHHHHTTHHHHaaaaavaaaa
7req_A_4337req   A435444KAIEKGIPKMHHHHTTHHHHaaaaavaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a9x_A_921a9x   A     MNMANGANESE (II) ION Q - 93
1a9x_A_921a9x   A     PO4PHOSPHATE ION Q - 93
1a9x_A_921a9x   A     NETTETRAETHYLAMMONIUM ION Q - 93
1a9x_A_921a9x   A     NETTETRAETHYLAMMONIUM ION T - 94
1a9x_A_921a9x   A     NETTETRAETHYLAMMONIUM ION N - 97
1b74_A_1151b74   A     DGND-GLUTAMINE T - 117
1bob_*_2591bob   *     ACOACETYL COENZYME *A A - 260
1bob_*_2591bob   *     ACOACETYL COENZYME *A F - 261
1bob_*_2591bob   *     ACOACETYL COENZYME *A D - 263
1bob_*_2591bob   *     ACOACETYL COENZYME *A L - 264
1bob_*_2591bob   *     ACOACETYL COENZYME *A R - 267
1bob_*_2591bob   *     ACOACETYL COENZYME *A N - 268
1dmh_A_711dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE A - 71
1dmh_A_711dmh   A     MCT4-METHYLCATECHOL G - 72
1dmh_A_711dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE G - 72
1dmh_A_711dmh   A     MCT4-METHYLCATECHOL L - 73
1dmh_A_711dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE L - 74
1dmh_A_711dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE S - 75
1dmh_A_711dmh   A     MCT4-METHYLCATECHOL P - 76
1dmh_A_711dmh   A     MCT4-METHYLCATECHOL G - 77
1dmh_A_711dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE L - 78
1dmh_A_711dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE F - 80
1dmh_A_711dmh   A     MCT4-METHYLCATECHOL D - 81
1dxy_*_1021dxy   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 105
1ebf_A_2121ebf   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE K - 223
1g2r_A_531g2r   A     SULSULFATE ANION E - 58
1g2r_A_531g2r   A     SULSULFATE ANION K - 61
1g2r_A_531g2r   A     SULSULFATE ANION K - 62
1j9a_A_631j9a   A     MSESELENOMETHIONINE D - 63
1j9a_A_631j9a   A     MSESELENOMETHIONINE W - 64
1j9a_A_631j9a   A     MSESELENOMETHIONINE C - 65
1j9a_A_631j9a   A     MSESELENOMETHIONINE Q - 66
1j9a_A_631j9a   A     MSESELENOMETHIONINE H - 69
1j9a_A_631j9a   A     MSESELENOMETHIONINE I - 75
1j9a_A_631j9a   A     MSESELENOMETHIONINE I - 78
1m6y_A_2051m6y   A     MSESELENOMETHIONINE F - 208
1m6y_A_2051m6y   A     MSESELENOMETHIONINE Q - 209
1m6y_A_2051m6y   A     MSESELENOMETHIONINE I - 211
1m6y_A_2051m6y   A     MSESELENOMETHIONINE R - 212
1m6y_A_2051m6y   A     MSESELENOMETHIONINE V - 215
1m6y_A_2051m6y   A     MSESELENOMETHIONINE N - 216
1m6y_A_2051m6y   A     SAHS-ADENOSYL-L-HOMOCYSTEINE N - 216
1m6y_A_2051m6y   A     MSESELENOMETHIONINE E - 218
1m6y_A_2051m6y   A     SAHS-ADENOSYL-L-HOMOCYSTEINE E - 218
1m6y_A_2051m6y   A     MSESELENOMETHIONINE N - 221
1m6y_A_2051m6y   A     SAHS-ADENOSYL-L-HOMOCYSTEINE N - 221
1m6y_A_2051m6y   A     MSESELENOMETHIONINE L - 222
1m6y_A_2051m6y   A     MSESELENOMETHIONINE F - 225
1m6y_A_2051m6y   A     MSESELENOMETHIONINE L - 226
1mx3_A_1251mx3   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 125
1mx3_A_1251mx3   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 128
1n4k_A_5041n4k   A     I3PD-MYO-INOSITOL-1,4,5-TRIPHOSPHATE R - 504
1n4k_A_5041n4k   A     I3PD-MYO-INOSITOL-1,4,5-TRIPHOSPHATE K - 508
1n4k_A_5041n4k   A     I3PD-MYO-INOSITOL-1,4,5-TRIPHOSPHATE R - 511
1n4k_A_5041n4k   A     I3PD-MYO-INOSITOL-1,4,5-TRIPHOSPHATE E - 512
1q7e_A_1421q7e   A     MSESELENOMETHIONINE E - 142
1q7e_A_1421q7e   A     MSESELENOMETHIONINE N - 143
1q7e_A_1421q7e   A     MSESELENOMETHIONINE A - 145
1qv9_A_1471qv9   A     MSESELENOMETHIONINE V - 147
1qv9_A_1471qv9   A     MSESELENOMETHIONINE L - 148
1qv9_A_1471qv9   A     MSESELENOMETHIONINE A - 149
1qv9_A_1471qv9   A     MSESELENOMETHIONINE A - 150
1qv9_A_1471qv9   A     MSESELENOMETHIONINE T - 151
1qv9_A_1471qv9   A     MSESELENOMETHIONINE F - 154
1qv9_A_1471qv9   A     MSESELENOMETHIONINE V - 157
1qv9_A_1471qv9   A     MSESELENOMETHIONINE F - 161
1qv9_A_1471qv9   A     MGMAGNESIUM ION K - 167
1uas_A_251uas   A     GOLGLYCEROL L - 43
1upk_A_641upk   A     MSESELENOMETHIONINE L - 70
1upk_A_641upk   A     MSESELENOMETHIONINE L - 74
1upk_A_641upk   A     MSESELENOMETHIONINE L - 79
1upk_A_641upk   A     MSESELENOMETHIONINE S - 81
1upk_A_641upk   A     MSESELENOMETHIONINE T - 82
1upk_A_641upk   A     MSESELENOMETHIONINE L - 83
1upk_A_641upk   A     MSESELENOMETHIONINE V - 84
1upk_A_641upk   A     MSESELENOMETHIONINE A - 85
7req_A_4337req   A     B12COBALAMIN K - 443
7req_A_4337req   A     B12COBALAMIN Q - 454
7req_A_4337req   A     B12COBALAMIN D - 458

Clusters included in this Subclass
CLUSTER: HH.0.19
CLUSTER: HH.1.4
CLUSTER: HH.2.38
CLUSTER: HH.2.8
CLUSTER: HH.3.63