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Information on SUBCLASS 1.3.2
Subclass Accession number: 2122
Subclass: 1.3.2 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 46

Average sequence ID (%) : 11.6 +/- 14.1
Average RMSD (Å) : 0.461 +/- 0.158

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 90-135 rho (°): 270-315
Consensus Sequence: XXcXX
(φψ)-conformation: aalaa
Pattern: x[afilmv]x[adeknqrs]x[adegknqrs]xx[adegnpst]x[acfilmtv]
Conservation:-0.7651.263-0.8300.578-0.0021.409-1.058-0.993-0.414-0.6441.456
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8i_*_951a8i   -98108TMVNLALENACHHHHHT-HHHHaaaaavaaaaa
1aco_*_2741aco   -279289YLSKTGRADIAHHHHTT-HHHHaaaaavaaaaa
1amf_*_1241amf   -132142ALQKLGAWDTLHHHHTT-HHHHaaaaavaaaaa
1bed_*_661bed   -7585TMIALEVEDKMHHHHTT-HHHHaaaaalaaaaa
1bfd_*_2091bfd   -210220DVDAANANADCHHHHHT-HHHHaaaaalaaaaa
1bm8_*_801bm8   -8696LAEKFSVYDQLHHHHTT-HHHHaaaaalaaaaa
1dmh_A_521dmh   A6474QLGANQEAGLLHHHHTT-HHHHaaaaalaaaaa
1e12_A_1821e12   A186196SASSAGTAEIFHHHHHT-HHHHaaaaavaaaaa
1efd_N_1301efd   N141151MADLLNLQSAAHHHHHT-HHHHaaaaalaaaaa
1emu_A_1331emu   A142152FLKQEGCADLLHHHHTT-THHHaaaaavaaaaa
1eu1_A_5111eu1   A518528LAERLGKGAEFHHHHTT-HHHHaaaaavaaaaa
1fqi_A_3071fqi   A316326FLRKEFSGENLHHHHTT-THHHaaaaavaaaaa
1fvk_A_661fvk   A7888VAMALGVEDKVHHHHHT-HHHHaaaaavaaaaa
1hn0_A_4051hn0   A407417ALKEANLQTQVHHHHTT-HHHHaaaaavaaaaa
1htr_P_131htr   P1626TMKEKGLLGEFHHHHTT-HHHHaaaaavaaaaa
1i36_A_1541i36   A179189AAHRLGLEEDVHHHHTT-HHHHaaaaavaaaaa
1ia6_A_821ia6   A8494SFDATGNTTKMHHHHTT-HHHHaaaaavaaaaa
1io7_A_2311io7   A233243RIREENLYLKAHHHHHT-HHHHaaaaalaaaaa
1iq8_A_2971iq8   A321331QAIKEGELWRLHHHHHT-HHHHaaaaavaaaaa
1j23_A_521j23   A5767QSIIDGGLFDQHHHHTT-HHHHaaaaavaaaaa
1j8f_A_3241j8f   A331341LAELLGWKKELHHHHTT-HHHHaaaaavaaaaa
1jhg_A_91jhg   A2838NAYQNDLHLPLHHHHTT-HHHHaaaaalaaaaa
1jj2_C_1501jj2   C156166LLEALDVHADIHHHHTT-HHHHaaaaalaaaaa
1jj7_A_6091jj7   A615625AAVKSGAHSFIHHHHHT-HHHHaaaaavaaaaa
1jr2_A_641jr2   A7383CLEQNNKTEVWHHHHTT-HHHHaaaaavaaaaa
1kqf_C_921kqf   C93103VEVLKGNEHKVHHHHTT-HHHHaaaaavaaaaa
1mna_A_111mna   A1828QAVEDDRYGEFHHHHTT-HHHHaaaaavaaaaa
1mq4_A_1661mq4   A168178QLEKAGVEHQLHHHHHT-HHHHaaaaavaaaaa
1n40_A_851n40   A8898NIADAGLRKAVHHHHTT-HHHHaaaaavaaaaa
1n55_A_1311n55   A132142QQREANQTAKVHHHHTT-HHHHaaaaavaaaaa
1nf1_A_12361nf1   A12461256LFDSRHLLYQLHHHTTT-HHHHaaaaavaaaaa
1o6l_A_1851o6l   A187197VIIAKDEVAHTHHHHTT-HHHHaaaaalaaaaa
1o94_A_5661o94   A567577YMHFTLEYPNMHHHHTT-HHHHaaaaavaaaaa
1oaf_A_101oaf   A2636FIAEKRCAPLMHHHHHT-HHHHaaaaavaaaaa
1omw_A_2241omw   A226236RIKMKQGETLAHHHHHT-HHHHaaaaalaaaaa
1ozj_A_251ozj   A4151KLKKTGQLDELHHHHTT-HHHHaaaaalaaaaa
1pa1_A_5021pa1   A509519QIDKSGSWAAIHHHHHT-HHHHaaaaavaaaaa
1q14_A_2701q14   A277287LVEELGWQEDFHHHHHT-HHHHaaaaavaaaaa
1qde_A_1711qde   A173183EMLSSGFKEQIHHHHTT-HHHHaaaaavaaaaa
1qwg_A_751qwg   A8090YAYSKGKFDEFHHHHTT-HHHHaaaaavaaaaa
1rdq_E_761rdq   E7888KVVKLKQIEHTHHHHTT-HHHHaaaaavaaaaa
1sbp_*_2271sbp   -229239VVEKKDTKAVAHHHHHT-HHHHaaaaalaaaaa
1sw6_A_3631sw6   A363373NNYDSGTFEALHHHHTT-HHHHaaaaalaaaaa
1upa_A_2251upa   A226236AAIRSGAVPAIHHHHTT-HHHHaaaaavaaaaa
1uu3_A_1151uu3   A117127HIIKENKVPYVHHHHTT-HHHHaaaaalaaaaa
1wer_*_7491wer   -759769IFLHEKLESLLHHHHTT-HHHHaaaaavaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1amf_*_1241amf   *     MOOMOLYBDATE ION P - 124
1amf_*_1241amf   *     MOOMOLYBDATE ION A - 125
1amf_*_1241amf   *     MOOMOLYBDATE ION G - 126
1amf_*_1241amf   *     MOOMOLYBDATE ION Y - 128
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE D - 53
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE E - 54
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE Y - 55
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE A - 57
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE G - 58
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE V - 59
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE Y - 61
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE L - 62
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE Q - 64
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE L - 65
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE A - 71
1dmh_A_521dmh   A     MCT4-METHYLCATECHOL G - 72
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE G - 72
1dmh_A_521dmh   A     MCT4-METHYLCATECHOL L - 73
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE L - 74
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE S - 75
1dmh_A_521dmh   A     MCT4-METHYLCATECHOL P - 76
1dmh_A_521dmh   A     MCT4-METHYLCATECHOL G - 77
1e12_A_1821e12   A     RETRETINAL W - 207
1e12_A_1821e12   A     RETRETINAL L - 208
1e12_A_1821e12   A     RETRETINAL Y - 210
1e12_A_1821e12   A     RETRETINAL P - 211
1e12_A_1821e12   A     RETRETINAL W - 214
1emu_A_1331emu   A     GOLGLYCEROL Q - 133
1emu_A_1331emu   A     GOLGLYCEROL D - 134
1emu_A_1331emu   A     GOLGLYCEROL I - 136
1emu_A_1331emu   A     GOLGLYCEROL S - 137
1eu1_A_5111eu1   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE D - 511
1eu1_A_5111eu1   A     GLCGLUCOSE D - 513
1eu1_A_5111eu1   A     CDCADMIUM ION R - 521
1fqi_A_3071fqi   A     MSESELENOMETHIONINE K - 308
1fqi_A_3071fqi   A     MSESELENOMETHIONINE S - 312
1fqi_A_3071fqi   A     MSESELENOMETHIONINE F - 313
1fqi_A_3071fqi   A     MSESELENOMETHIONINE L - 317
1fqi_A_3071fqi   A     MSESELENOMETHIONINE N - 325
1fqi_A_3071fqi   A     MSESELENOMETHIONINE L - 326
1fqi_A_3071fqi   A     MSESELENOMETHIONINE W - 329
1i36_A_1541i36   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE K - 159
1io7_A_2311io7   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 248
1iq8_A_2971iq8   A     ZNZINC ION H - 307
1iq8_A_2971iq8   A     ZNZINC ION N - 308
1iq8_A_2971iq8   A     ZNZINC ION W - 310
1iq8_A_2971iq8   A     ZNZINC ION V - 311
1mq4_A_1661mq4   A     PO4PHOSPHATE ION H - 176
1mq4_A_1661mq4   A     PO4PHOSPHATE ION Q - 177
1mq4_A_1661mq4   A     PO4PHOSPHATE ION R - 180
1mq4_A_1661mq4   A     MGMAGNESIUM ION E - 181
1mq4_A_1661mq4   A     ADPADENOSINE-5'-DIPHOSPHATE E - 181
1n40_A_851n40   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 85
1n40_A_851n40   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 86
1n40_A_851n40   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 87
1o6l_A_1851o6l   A     TPOPHOSPHOTHREONINE H - 196
1o6l_A_1851o6l   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER E - 200
1o6l_A_1851o6l   A     MNMANGANESE (II) ION E - 200
1oaf_A_101oaf   A     ASCASCORBIC ACID K - 30
1oaf_A_101oaf   A     ASCASCORBIC ACID R - 31
1oaf_A_101oaf   A     ASCASCORBIC ACID C - 32
1oaf_A_101oaf   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 33
1oaf_A_101oaf   A     ASCASCORBIC ACID A - 33
1oaf_A_101oaf   A     HEMPROTOPORPHYRIN IX CONTAINING FE P - 34
1oaf_A_101oaf   A     ASCASCORBIC ACID P - 34
1oaf_A_101oaf   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 35
1oaf_A_101oaf   A     ASCASCORBIC ACID L - 35
1oaf_A_101oaf   A     ASCASCORBIC ACID M - 36
1oaf_A_101oaf   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 37
1oaf_A_101oaf   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 38
1oaf_A_101oaf   A     HEMPROTOPORPHYRIN IX CONTAINING FE W - 41
1oaf_A_101oaf   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 42
1rdq_E_761rdq   E     TPOPHOSPHOTHREONINE H - 87
1rdq_E_761rdq   E     TPOPHOSPHOTHREONINE N - 90
1rdq_E_761rdq   E     MGMAGNESIUM ION E - 91
1rdq_E_761rdq   E     ADPADENOSINE-5'-DIPHOSPHATE E - 91
1rdq_E_761rdq   E     ATPADENOSINE-5'-TRIPHOSPHATE E - 91
1uu3_A_1151uu3   A     GOLGLYCEROL I - 118
1uu3_A_1151uu3   A     GOLGLYCEROL K - 123
1uu3_A_1151uu3   A     SEPPHOSPHOSERINE Y - 126
1uu3_A_1151uu3   A     GOLGLYCEROL Y - 126
1uu3_A_1151uu3   A     GOLGLYCEROL V - 127
1uu3_A_1151uu3   A     GOLGLYCEROL T - 128
1uu3_A_1151uu3   A     SEPPHOSPHOSERINE R - 129
1uu3_A_1151uu3   A     GOLGLYCEROL E - 130
1uu3_A_1151uu3   A     LY4(9R)-9-[(DIMETHYLAMINO)METHYL]-6,7,10,11-TETRAHYDRO-9H,18H-5,21:12,17-DIMETHENODIBENZO[E,K]PYRROLO[3,4-H] [1,4,13]OXADIAZACYCLOHEXADECINE-18,20-DIONE E - 130
1uu3_A_1151uu3   A     GOLGLYCEROL R - 131
1uu3_A_1151uu3   A     LY4(9R)-9-[(DIMETHYLAMINO)METHYL]-6,7,10,11-TETRAHYDRO-9H,18H-5,21:12,17-DIMETHENODIBENZO[E,K]PYRROLO[3,4-H] [1,4,13]OXADIAZACYCLOHEXADECINE-18,20-DIONE M - 134
1uu3_A_1151uu3   A     GOLGLYCEROL S - 135
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1amf_*_1241amf   * MO4MOLYBDATE BINDING SITE.A - 125
1jhg_A_91jhg   A WBSL-TRYPTOPHAN BINDING SITE PLEASE NOTE THAT LEU 41 AND THR 44 FORM PART OF THE BINDING SITE ON THE SUBUNIT OF REPRESSOR THAT MAY BE GENERATED BY THE INDICATED SYMMETRY OPERATOR.L - 41
1oaf_A_101oaf   A AC1HEM BINDING SITE FOR CHAIN AP - 34
1oaf_A_101oaf   A AC1HEM BINDING SITE FOR CHAIN AW - 41
1uu3_A_1151uu3   A AC1LY4 BINDING SITE FOR CHAIN AE - 130

Clusters included in this Subclass
CLUSTER: HH.1.114
CLUSTER: HH.2.14
CLUSTER: HH.3.67
CLUSTER: HH.3.8
CLUSTER: HH.4.14
CLUSTER: HH.4.157