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Information on SUBCLASS 1.3.3
Subclass Accession number: 2123
Subclass: 1.3.3 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 23

Average sequence ID (%) : 14.5 +/- 15.4
Average RMSD (Å) : 0.426 +/- 0.114

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 90-135 rho (°): 180-225
Consensus Sequence: XXchX
(φψ)-conformation: aalaa
Pattern: xx[afgilv]x[adegknqr]x[dgknq][afgkltv][iltvw][adegpqs]x[filmvw]
Conservation:-0.809-0.7151.074-0.769-0.140-0.9871.673-0.1120.026-0.126-0.9501.835
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1am7_A_881am7   A97108QQIKERGALPMIHHHHHTT-HHHHaaaaaavaaaaa
1amf_*_1241amf   -131142EALQKLGAWDTLHHHHHTT-HHHHaaaaaavaaaaa
1atg_*_1171atg   -124135QVLTHLGLLDKLHHHHHTT-HHHHaaaaaavaaaaa
1b79_A_831b79   A8899ESLERQGQLDSVHHHHTTTTHHHHaaaaaavaaaaa
1bu6_O_1091bu6   O113124EHLKRDGLEDYIHHHHHTTTHHHHaaaaaavaaaaa
1d2z_A_391d2z   A4758AHLDALDVWQQLHHHHHHT-HHHHaaaaaalaaaaa
1d4o_A_311d4o   A3142YGLCAAKAQYPIHHHHHTTTHHHHaaaaaalaaaaa
1ee4_A_1231ee4   A124135DVVIQAGVVPRLHHHHHTT-HHHHaaaaaavaaaaa
1ee4_A_2051ee4   A209220DYVLQCNAMEPIHHHHHTT-HHHHaaaaaavaaaaa
1ee4_A_3731ee4   A377388QAVIDANLIPPLHHHHHTT-HHHHaaaaaalaaaaa
1fye_A_901fye   A95106KESRERGLLAPMHHHHHTT-HHHHaaaaaavaaaaa
1hlw_A_171hlw   A1728PDGVARGLVGEIHHHHHTT-HHHHaaaaaavaaaaa
1io7_A_2111io7   A223234IDFTRFNLWQRIHHHHHTT-HHHHaaaaaalaaaaa
1j23_A_521j23   A5667IQSIIDGGLFDQHHHHHTT-HHHHaaaaaavaaaaa
1jdh_A_4781jdh   A483494NAVRLHYGLPVVHHHHHTT-HHHHaaaaaalaaaaa
1jdh_A_5841jdh   A588599IVIRGLNTIPLFHHHHHTT-HHHHaaaaaalaaaaa
1jdh_A_6251jdh   A629640EAIEAEGATAPLHHHHHTT-HHHHaaaaaavaaaaa
1jr2_A_641jr2   A7283LCLEQNNKTEVWHHHHHTT-HHHHaaaaaavaaaaa
1jvn_A_531jvn   A5869DNLFNRGFEKPIHHHHHTT-HHHHaaaaaavaaaaa
1k9v_F_3541k9v   F359370RRLRENDLIDFVHHHHHTT-HHHHaaaaaalaaaaa
1oe4_A_2621oe4   A268279GQLLELGVLSLLHHHHHHT-HHHHaaaaaavaaaaa
1r0w_A_5141r0w   A519530SVVKACQLQQDIHHHHHTT-HHHHaaaaaavaaaaa
1upa_A_2251upa   A225236AAAIRSGAVPAIHHHHHTT-HHHHaaaaaavaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1am7_A_881am7   A     TRNNZ2-TRYPTOPHAN S - 90
1am7_A_881am7   A     TRNNZ2-TRYPTOPHAN Q - 91
1am7_A_881am7   A     TRNNZ2-TRYPTOPHAN V - 94
1am7_A_881am7   A     TRNNZ2-TRYPTOPHAN A - 95
1am7_A_881am7   A     TRNNZ2-TRYPTOPHAN L - 96
1am7_A_881am7   A     TRNNZ2-TRYPTOPHAN Q - 98
1am7_A_881am7   A     TRNNZ2-TRYPTOPHAN I - 99
1amf_*_1241amf   *     MOOMOLYBDATE ION P - 124
1amf_*_1241amf   *     MOOMOLYBDATE ION A - 125
1amf_*_1241amf   *     MOOMOLYBDATE ION G - 126
1amf_*_1241amf   *     MOOMOLYBDATE ION Y - 128
1atg_*_1171atg   *     WO4TUNGSTATE(VI)ION P - 117
1atg_*_1171atg   *     WO4TUNGSTATE(VI)ION Y - 118
1atg_*_1171atg   *     WO4TUNGSTATE(VI)ION G - 119
1d4o_A_311d4o   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Y - 31
1d4o_A_311d4o   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 32
1d4o_A_311d4o   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE L - 33
1d4o_A_311d4o   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE A - 35
1d4o_A_311d4o   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE A - 36
1io7_A_2111io7   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 211
1io7_A_2111io7   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 213
1io7_A_2111io7   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 214
1io7_A_2111io7   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 217
1jvn_A_531jvn   A     143S-2,3-DIHYDRO-5-GLYCIN-2-YL-ISOXAZOL-3-YL-CYSTEINE Y - 53
1jvn_A_531jvn   A     NINICKEL (II) ION Y - 53
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1amf_*_1241amf   * MO4MOLYBDATE BINDING SITE.A - 125
1atg_*_1171atg   * MOBANION-BINDING POCKET LOCATED AT THE INTERFACE BETWEEN THE 2 DOMAINS OF THE PROTEIN. BINDS BOTH MOLYBDATE AND TUNGSTATE.Y - 118

Clusters included in this Subclass
CLUSTER: HH.2.33
CLUSTER: HH.3.37
CLUSTER: HH.4.20