Logo
Information on SUBCLASS 1.4.2
Subclass Accession number: 2142
Subclass: 1.4.2 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
SCOP : 51350 (>50 %)  
 Number of loops: 9

Average sequence ID (%) : 17.5 +/- 17.3
Average RMSD (Å) : 0.656 +/- 0.224

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 90-135 rho (°): 0-45
Consensus Sequence: XXGXX
(φψ)-conformation: aaeaa
Pattern: x[aeknqt]xx[G]xxx[gilpv]x
Conservation:-0.173-0.166-0.278-0.4262.829-0.443-0.317-0.245-0.289-0.492
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1d3g_A_3571d3g   A359368LTFWGPPVVGHHHH-THHHHaaaaeaaaaa
1hiz_A_1721hiz   A174183YQIAGIDYIKHHHHTTHHHHaaaaeaaaaa
1izo_A_131izo   A1726LLKEGYLFIKHHHHGGGHHHaaaaeaaaaa
1km4_A_451km4   A4857VLSEGMDIIAHHHH-THHHHaaaaeaaaaa
1nf9_A_841nf9   A8493EEQRGLLKDFHHHHTTHHHHaaaaeaaaaa
1ur1_A_1691ur1   A171180YKIMGDDFIYHHHHTTHHHHaaaaeaaaaa
1vc4_A_1361vc4   A136145VALLGELTGAHHHHGGGHHHaaaaeaaaaa
1vj5_A_4431vj5   A453462FKKSGFRGPLHHHHTTHHHHaaaaeaaaaa
1xyz_A_6581xyz   A660669RNVIGQDYLDHHHH-TTHHHaaaaeaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1d3g_A_3571d3g   A     FMNFLAVIN MONONUCLEOTIDE T - 357
1d3g_A_3571d3g   A     FMNFLAVIN MONONUCLEOTIDE A - 358
1d3g_A_3571d3g   A     BRE2-BIPHENYL-4-YL-6-FLUORO-3-METHYL-QUINOLINE-4-CARBOXYLIC ACID L - 359
1d3g_A_3571d3g   A     BRE2-BIPHENYL-4-YL-6-FLUORO-3-METHYL-QUINOLINE-4-CARBOXYLIC ACID T - 360
1d3g_A_3571d3g   A     BRE2-BIPHENYL-4-YL-6-FLUORO-3-METHYL-QUINOLINE-4-CARBOXYLIC ACID F - 361
1d3g_A_3571d3g   A     BRE2-BIPHENYL-4-YL-6-FLUORO-3-METHYL-QUINOLINE-4-CARBOXYLIC ACID G - 363
1d3g_A_3571d3g   A     BRE2-BIPHENYL-4-YL-6-FLUORO-3-METHYL-QUINOLINE-4-CARBOXYLIC ACID P - 364
1izo_A_131izo   A     PAMPALMITOLEIC ACID L - 17
1izo_A_131izo   A     PAMPALMITOLEIC ACID L - 18
1nf9_A_841nf9   A     FMTFORMIC ACID R - 87
1nf9_A_841nf9   A     FMTFORMIC ACID L - 90
1nf9_A_841nf9   A     FMTFORMIC ACID W - 94

Clusters included in this Subclass
CLUSTER: HH.1.86
CLUSTER: HH.3.65