ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 1.9.1

Subclass Accession number: 2157
Subclass: 1.9.1

Type: HH alpha-alpha
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Conserved Annotation
SCOP : 53066 (>50 %)

Number of loops: 3

Average sequence ID (%) : 6.2 +/- 12.4
Average RMSD (Å) : 0.500 +/- 0.100

Consensus geometry

d (Å): 5

delta (°): 45-90

theta (°): 0-45

rho (°): 0-45

Consensus Sequence:	hXphX
(φψ)-conformation:	aaNaa

Pattern:	[ERS]	x	[GKR]	[ITY]	[IKV]	[AGN]	x	x	[IKL]	[VY]	[AEK]	[HRT]	[AFI]	x	[HQY]	[ES]
Conservation:	0.020	-0.362	0.020	-0.743	-0.552	0.020	-0.151	-0.743	-0.934	1.322	0.020	0.020	-0.743	-1.315	1.927	2.195

Loops included in this Subclass

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1h0o_A_122	1h0o	A	COCOBALT (II) ION	D - 139
1h0o_A_122	1h0o	A	COCOBALT (II) ION	V - 142
1o7q_A_195	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	W - 195
1o7q_A_195	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	Q - 196
1o7q_A_195	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	D - 197
1o7q_A_195	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	I - 198
1o7q_A_195	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	S - 199
1o7q_A_195	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	M - 200
1o7q_A_195	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	M - 201
1o7q_A_195	1o7q	A	MNMANGANESE (II) ION	R - 202
1o7q_A_195	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	R - 202
1uby_*_204	1uby	*	DMADIMETHYLALLYL DIPHOSPHATE	K - 214
1uby_*_204	1uby	*	MGMAGNESIUM ION	K - 214
1uby_*_204	1uby	*	DMADIMETHYLALLYL DIPHOSPHATE	T - 215
1uby_*_204	1uby	*	DMADIMETHYLALLYL DIPHOSPHATE	Y - 218

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1o7q_A_195	1o7q	A	AC6UDP BINDING SITE FOR CHAIN A	W - 195
1o7q_A_195	1o7q	A	AC7UDP BINDING SITE FOR CHAIN A	D - 197
1o7q_A_195	1o7q	A	AC6UDP BINDING SITE FOR CHAIN A	I - 198
1o7q_A_195	1o7q	A	AC6UDP BINDING SITE FOR CHAIN A	S - 199
1o7q_A_195	1o7q	A	AC6UDP BINDING SITE FOR CHAIN A	R - 202

Clusters included in this Subclass