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Information on SUBCLASS 2.1.4
Subclass Accession number: 2163
Subclass: 2.1.4 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 39

Average sequence ID (%) : 11.4 +/- 13.7
Average RMSD (Å) : 0.559 +/- 0.170

Consensus geometry
d (Å): 9 delta (°): 0-45 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: ppXXXX
(φψ)-conformation: aappaa
Pattern: xx[afilmvy][adeknqrst][adegknqrst]x[dehknpst][adenpqst]xxx
Conservation:-1.521-1.6400.468-0.0530.6310.6761.7500.140-0.204-0.7420.495
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8o_*_1891a8o   -189199LLVQNANPDCKHHHHTS-HHHHaaaaaxxaaaa
1alu_*_1411alu   -149159TKLQAQNQWLQHHHHTS-HHHHaaaaaxxaaaa
1eb6_A_1481eb6   A149159DAATQLSAQDAHHHHTS-HHHHaaaaaxxaaaa
1emu_A_1921emu   A192202IVSRQTKPATKHHHHTS-HHHHaaaaabxaaaa
1eov_A_2081eov   A208218LEDASRSEAEAHHHHTS-HHHHaaaaaxxaaaa
1ew0_A_1241ew0   A132142VRARDAHLRSIHHHHTS-HHHHaaaaaxxaaaa
1ezf_A_1251ezf   A130140LEFRNLAEKYQHHHHTS-HHHHaaaaaxxaaaa
1f7c_A_2901f7c   A299309SLVHRLPEKNRHHHTTS-HHHHaaaaaxxaaaa
1fnn_A_1691fnn   A169179AVLNNLDPSTRHHHHTS-HHHHaaaaaxpaaaa
1g0x_A_451g0x   A4555PWITRIPQELVHHHHTS-HHHHaaaaaxwaaaa
1g8e_A_401g8e   A4454TTLAALTLPQMHHHHT--HHHHaaaaaxxaaaa
1gwe_A_4281gwe   A433443LVREVFSDQERHHHHTS-HHHHaaaaapxaaaa
1hfu_A_4811hfu   A488498EIYDDLPPEATHHHHT--HHHHaaaaapxaaaa
1i0d_A_1361i0d   A136146LSMRLRSVEELHHHHT--HHHHaaaaaxxaaaa
1ih7_A_5241ih7   A528538EKIKKLSAKSLHHHTT-BHHHHaaaaaxxaaaa
1j7n_A_2791j7n   A280290HWSDSLSEEGRHHHHT--HHHHaaaaaxxaaaa
1jce_A_2511jce   A263273TTLEKTPPELVHHHHTS-HHHHaaaaaxpaaaa
1jqn_A_501jqn   A5868TTLQNLSNDELHHHHT--HHHHaaaaaxxaaaa
1k1x_A_2751k1x   A275285MSEWSLPAKQAHHHHTS-HHHHaaaaaxxaaaa
1m8z_A_10781m8z   A10841094KCVTHASRTERHHHHHS-HHHHaaaaaxxaaaa
1m8z_A_11211m8z   A11271137KMIDVAEPGQRHHHHHS-HHHHaaaaaxpaaaa
1m98_A_931m98   A96106RTYASWSPNIKHHHHTB-HHHHaaaaaxxaaaa
1mix_A_2011mix   A202212QNVDSRDPVQLHHHHTS-HHHHaaaaapxaaaa
1mtz_A_1341mtz   A143153RLIDELPAKYRHHHHTS-HHHHaaaaaxpaaaa
1mxr_A_581mxr   A6070IDYQALPEHEKHHHHTS-HHHHaaaaaxxaaaa
1n00_A_1091n00   A113123EIACTRSANQLHHHHSS-HHHHaaaaabxaaaa
1ono_A_1511ono   A155165AIFQSLPQPIQHHHHTS-HHHHaaaaaxxaaaa
1pmi_*_1931pmi   -207217GKLMNTDDDVIHHHHTS-HHHHaaaaaxxaaaa
1q3e_A_5161q3e   A516526PLFANADPNFVHHHHTS-HHHHaaaaaxxaaaa
1q7c_A_1871q7c   A187197DMTRALSDDQRHHHHTS-HHHHaaaaaxxaaaa
1qs1_A_2761qs1   A286296EWAKDLTDSQRHHHHT--HHHHaaaaaxxaaaa
1rjd_A_571rjd   A6575KAMRSSFPVMNHHHHT--HHHHaaaaaxxaaaa
1rql_A_2151rql   A216226EEVENMDSVELHHHHTS-HHHHaaaaabxaaaa
1rxx_A_1041rxx   A109119SWLESLEPRKLHHHHTS-HHHHaaaaaxxaaaa
1tgo_A_3411tgo   A342352WDVSRSSTGNLHHHHT--HHHHaaaaabxaaaa
1uay_A_1841uay   A184194PLLQGLPEKAKHHHHTS-HHHHaaaaabxaaaa
1uqt_A_4051uqt   A413423DRALTMSLAERHHHHT--HHHHaaaaaxxaaaa
1us7_B_2341us7   B239249TKIKTADRQYMHHHHT--HHHHaaaaaxpaaaa
1v33_A_1571v33   A157167EWALKLDSKSRHHHHT--HHHHaaaaapxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a8o_*_1891a8o   *     MSESELENOMETHIONINE L - 189
1a8o_*_1891a8o   *     MSESELENOMETHIONINE L - 190
1a8o_*_1891a8o   *     MSESELENOMETHIONINE V - 191
1a8o_*_1891a8o   *     MSESELENOMETHIONINE N - 193
1a8o_*_1891a8o   *     MSESELENOMETHIONINE C - 198
1a8o_*_1891a8o   *     MSESELENOMETHIONINE L - 202
1alu_*_1411alu   *     TARD(-)-TARTARIC ACID L - 174
1alu_*_1411alu   *     TARD(-)-TARTARIC ACID Q - 175
1alu_*_1411alu   *     TARD(-)-TARTARIC ACID S - 176
1alu_*_1411alu   *     TARD(-)-TARTARIC ACID L - 178
1alu_*_1411alu   *     TARD(-)-TARTARIC ACID R - 179
1alu_*_1411alu   *     TARD(-)-TARTARIC ACID A - 180
1emu_A_1921emu   A     GOLGLYCEROL S - 194
1emu_A_1921emu   A     GOLGLYCEROL R - 195
1emu_A_1921emu   A     GOLGLYCEROL Q - 196
1emu_A_1921emu   A     GOLGLYCEROL T - 197
1emu_A_1921emu   A     GOLGLYCEROL K - 198
1emu_A_1921emu   A     GOLGLYCEROL P - 199
1emu_A_1921emu   A     GOLGLYCEROL K - 202
1emu_A_1921emu   A     GOLGLYCEROL S - 203
1emu_A_1921emu   A     GOLGLYCEROL F - 204
1emu_A_1921emu   A     GOLGLYCEROL I - 205
1emu_A_1921emu   A     GOLGLYCEROL K - 206
1emu_A_1921emu   A     GOLGLYCEROL G - 207
1emu_A_1921emu   A     GOLGLYCEROL C - 208
1emu_A_1921emu   A     GOLGLYCEROL K - 211
1i0d_A_1361i0d   A     EGLETHYLENE GLYCOL L - 136
1i0d_A_1361i0d   A     EGLETHYLENE GLYCOL R - 139
1i0d_A_1361i0d   A     EGLETHYLENE GLYCOL L - 140
1i0d_A_1361i0d   A     EGLETHYLENE GLYCOL R - 141
1i0d_A_1361i0d   A     EGLETHYLENE GLYCOL S - 142
1i0d_A_1361i0d   A     EGLETHYLENE GLYCOL V - 143
1i0d_A_1361i0d   A     EGLETHYLENE GLYCOL T - 147
1i0d_A_1361i0d   A     EGLETHYLENE GLYCOL Q - 148
1i0d_A_1361i0d   A     EGLETHYLENE GLYCOL L - 151
1jce_A_2511jce   A     MSESELENOMETHIONINE V - 253
1jce_A_2511jce   A     MSESELENOMETHIONINE I - 257
1jce_A_2511jce   A     MSESELENOMETHIONINE V - 261
1jce_A_2511jce   A     MSESELENOMETHIONINE T - 264
1jce_A_2511jce   A     MSESELENOMETHIONINE L - 265
1jce_A_2511jce   A     MSESELENOMETHIONINE T - 268
1jce_A_2511jce   A     MSESELENOMETHIONINE I - 276
1jce_A_2511jce   A     MSESELENOMETHIONINE R - 279
1jqn_A_501jqn   A     ASPASPARTIC ACID E - 86
1m98_A_931m98   A     SUCSUCROSE N - 104
1m98_A_931m98   A     SUCSUCROSE I - 105
1m98_A_931m98   A     HEQ3-[18-(4-HYDROXY-2,6,6-TRIMETHYL-CYCLOHEX-1-ENYL)-3,7, 12,16-TETRAMETHYL-OCTADECA-1,3,5,7,9,11,13,15, 17-NONAENYL]-2,4,4-TRIMETHYL-CYCLOHEX-2-ENONE L - 107
1m98_A_931m98   A     HEQ3-[18-(4-HYDROXY-2,6,6-TRIMETHYL-CYCLOHEX-1-ENYL)-3,7, 12,16-TETRAMETHYL-OCTADECA-1,3,5,7,9,11,13,15, 17-NONAENYL]-2,4,4-TRIMETHYL-CYCLOHEX-2-ENONE W - 110
1m98_A_931m98   A     HEQ3-[18-(4-HYDROXY-2,6,6-TRIMETHYL-CYCLOHEX-1-ENYL)-3,7, 12,16-TETRAMETHYL-OCTADECA-1,3,5,7,9,11,13,15, 17-NONAENYL]-2,4,4-TRIMETHYL-CYCLOHEX-2-ENONE Y - 111
1m98_A_931m98   A     HEQ3-[18-(4-HYDROXY-2,6,6-TRIMETHYL-CYCLOHEX-1-ENYL)-3,7, 12,16-TETRAMETHYL-OCTADECA-1,3,5,7,9,11,13,15, 17-NONAENYL]-2,4,4-TRIMETHYL-CYCLOHEX-2-ENONE L - 113
1m98_A_931m98   A     HEQ3-[18-(4-HYDROXY-2,6,6-TRIMETHYL-CYCLOHEX-1-ENYL)-3,7, 12,16-TETRAMETHYL-OCTADECA-1,3,5,7,9,11,13,15, 17-NONAENYL]-2,4,4-TRIMETHYL-CYCLOHEX-2-ENONE G - 114
1m98_A_931m98   A     HEQ3-[18-(4-HYDROXY-2,6,6-TRIMETHYL-CYCLOHEX-1-ENYL)-3,7, 12,16-TETRAMETHYL-OCTADECA-1,3,5,7,9,11,13,15, 17-NONAENYL]-2,4,4-TRIMETHYL-CYCLOHEX-2-ENONE M - 117
1mxr_A_581mxr   A     HGMERCURY (II) ION N - 76
1mxr_A_581mxr   A     FEFE (III) ION D - 84
1mxr_A_581mxr   A     FEFE (III) ION Q - 87
1ono_A_1511ono   A     MW3MANGANESE ION, 3 WATERS COORDINATED S - 151
1ono_A_1511ono   A     MW3MANGANESE ION, 3 WATERS COORDINATED E - 152
1q7c_A_1871q7c   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE M - 188
1rjd_A_571rjd   A     SAMS-ADENOSYLMETHIONINE R - 81
1rxx_A_1041rxx   A     MSESELENOMETHIONINE I - 124
1uay_A_1841uay   A     ADNADENOSINE P - 184

Clusters included in this Subclass
CLUSTER: HH.2.41
CLUSTER: HH.3.45
CLUSTER: HH.3.61
CLUSTER: HH.4.65
CLUSTER: HH.4.9