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Information on SUBCLASS 2.2.5
Subclass Accession number: 2211
Subclass: 2.2.5 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0046914 (>75 %)  
SCOP : 47239 (>75 %)  47240 (>75 %)  
 Number of loops: 15

Average sequence ID (%) : 13.3 +/- 15.9
Average RMSD (Å) : 0.640 +/- 0.168

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: XXXXXX
(φψ)-conformation: aalpaa
Pattern: x[efhkqry]xxxxx[dgrs][adstv][ehknpst]x[AFGVY]x[ADEKNQRT][agiklv]
Conservation:-1.1180.364-0.1350.353-0.902-0.349-0.0461.6091.835-0.131-1.1630.638-1.2131.201-0.943
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bue_A_1191bue   A123137AAAALQYSDNGATNIHHHHHHS--HHHHHHaaaaaaalpaaaaaa
1dja_*_1191dja   -123137IEASMTYSDNTANNKHHHHHHS--HHHHHHaaaaaaalxaaaaaa
1dl2_A_4351dl2   A441455MFMYHLSHDHKYREWHHHHHHH--THHHHHaaaaaaavxaaaaaa
1e25_A_1191e25   A123137LQYSVSHSDNVACDLHHHHHHH--HHHHHHaaaaaaalxaaaaaa
1fo3_A_4021fo3   A406420RELSRLTGDKKFQEAHHHHHHH--THHHHHaaaaaaavxaaaaaa
1g9g_A_4131g9g   A423437AELYYKTGDARAKKLHHHHHHH--HHHHHHaaaaaaavpaaaaaa
1gyt_A_2251gyt   A225239EQQMKELGMHSYLAVHHHHHHTT-HHHHHHaaaaaaavxaaaaaa
1kre_A_2031kre   A207221TRLSDLTGDEEYAKLHHHHHHHS-THHHHHaaaaaaavxaaaaaa
1m6k_A_1081m6k   A108122PKTWMQFSVVWVSQEHHHHHHTT-HHHHHHaaaaaaalxaaaaaa
1msw_D_5411msw   D544558QHFSAMLRDEVGGRAHHHHHHHT-TTHHHHaaaaaaalxaaaaaa
1nrf_A_4431nrf   A443457LFSAMSSSTTWYFQKHHHHHHHT-HHHHHHaaaaaaalxaaaaaa
1nxc_A_3561nxc   A360374MHLSHLSGDPVFAEKHHHHHHH--THHHHHaaaaaaavxaaaaaa
1ot8_A_871ot8   A88102LHAAVAADAMGVFQIHHHHHHTT-HHHHHHaaaaaaalxaaaaaa
1qme_A_3881qme   A388402FSQGFAHSSNVGMTLHHHHHHTT-HHHHHHaaaaaaalxaaaaaa
1ut9_A_6801ut9   A692706GYAYDFTGDSKYLDGHHHHHHH--THHHHHaaaaaaavxaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dl2_A_4351dl2   A     CACALCIUM ION E - 435
1dl2_A_4351dl2   A     GOLGLYCEROL E - 435
1dl2_A_4351dl2   A     CACALCIUM ION E - 438
1m6k_A_1081m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID W - 111
1m6k_A_1081m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID M - 112
1m6k_A_1081m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID F - 114
1m6k_A_1081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL F - 114
1m6k_A_1081m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID S - 115
1m6k_A_1081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL S - 115
1m6k_A_1081m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID V - 116
1m6k_A_1081m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID V - 117
1m6k_A_1081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL V - 117
1m6k_A_1081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL W - 118
1m6k_A_1081m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID S - 120
1m6k_A_1081m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID Q - 121
1m6k_A_1081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL E - 122
1m6k_A_1081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL I - 123
1m6k_A_1081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL K - 126
1ot8_A_871ot8   A     MGMAGNESIUM ION M - 97
1ot8_A_871ot8   A     MGMAGNESIUM ION Q - 101

Clusters included in this Subclass
CLUSTER: HH.2.44
CLUSTER: HH.3.34