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Information on SUBCLASS 2.2.9
Subclass Accession number: 2215
Subclass: 2.2.9 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 1 (>75 %)  
 Number of loops: 7

Average sequence ID (%) : 16.7 +/- 18.0
Average RMSD (Å) : 0.657 +/- 0.151

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: pXXXXX
(φψ)-conformation: aalpaa
Pattern: [EGN][akr][aiv][DEKQS][akr][DEGS][aden]xx[AIVY][efkl]x
Conservation:1.305-0.0070.0821.4300.2571.356-0.574-0.957-1.3070.486-1.073-0.999
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1cuk_*_951cuk   -100111NAVEREEVGALVHHHHTT-HHHHHaaaaalbaaaaa
1g99_A_2841g99   A289300EAASKGNRKAELHHHHTT-HHHHHaaaaavxaaaaa
1k55_A_1081k55   A110121GAIQVSAVPVFQHHHHTT-HHHHHaaaaalxaaaaa
1l5j_A_1281l5j   A134145EKAKAGNEYAKQHHHHTT-HHHHHaaaaagxaaaaa
1or7_A_21or7   A1223ERVQKGDQKAFNHHHHTT-HHHHHaaaaagxaaaaa
1ub3_A_941ub3   A95106GRAKAGDLDYLEHHHHTT-HHHHHaaaaavxaaaaa
1whi_*_1051whi   -105116ELRDKDFMKIISHHHHTT-HHHHHaaaaavxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1g99_A_2841g99   A     ADPADENOSINE-5'-DIPHOSPHATE F - 284
1g99_A_2841g99   A     ADPADENOSINE-5'-DIPHOSPHATE R - 285
1g99_A_2841g99   A     ADPADENOSINE-5'-DIPHOSPHATE D - 286
1g99_A_2841g99   A     ADPADENOSINE-5'-DIPHOSPHATE D - 288
1k55_A_1081k55   A     KCXLYSINE NZ-CARBOXYLIC ACID A - 111
1k55_A_1081k55   A     KCXLYSINE NZ-CARBOXYLIC ACID I - 112
1k55_A_1081k55   A     SULSULFATE ANION I - 112
1k55_A_1081k55   A     SULSULFATE ANION Q - 113
1k55_A_1081k55   A     SULSULFATE ANION V - 114
1k55_A_1081k55   A     KCXLYSINE NZ-CARBOXYLIC ACID S - 115
1k55_A_1081k55   A     SULSULFATE ANION S - 115
1k55_A_1081k55   A     KCXLYSINE NZ-CARBOXYLIC ACID A - 116
1k55_A_1081k55   A     KCXLYSINE NZ-CARBOXYLIC ACID V - 117
1k55_A_1081k55   A     SULSULFATE ANION V - 117
1k55_A_1081k55   A     KCXLYSINE NZ-CARBOXYLIC ACID F - 120
1k55_A_1081k55   A     KCXLYSINE NZ-CARBOXYLIC ACID Q - 121
1k55_A_1081k55   A     SULSULFATE ANION R - 125
1k55_A_1081k55   A     SULSULFATE ANION V - 127
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1whi_*_1051whi   * R2A SECOND SITE IS PROPOSED TO INTERACT WITH 23S RRNA. IT IS LOCATED BETWEEN THE BETA BARREL AND THE C TERMINAL HELICAL DOMAIN.K - 113
1whi_*_1051whi   * R2A SECOND SITE IS PROPOSED TO INTERACT WITH 23S RRNA. IT IS LOCATED BETWEEN THE BETA BARREL AND THE C TERMINAL HELICAL DOMAIN.S - 116
1whi_*_1051whi   * R2A SECOND SITE IS PROPOSED TO INTERACT WITH 23S RRNA. IT IS LOCATED BETWEEN THE BETA BARREL AND THE C TERMINAL HELICAL DOMAIN.L - 117

Clusters included in this Subclass
CLUSTER: HH.2.56