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Information on SUBCLASS 2.3.2
Subclass Accession number: 2220
Subclass: 2.3.2 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 14

Average sequence ID (%) : 10.6 +/- 13.1
Average RMSD (Å) : 0.814 +/- 0.179

Consensus geometry
d (Å): 11 delta (°): 0-45 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: pXhXXX
(φψ)-conformation: aabpaa
Pattern: x[adegkq][AFILPVY]x[adknqrs]x[filtvy][adgnpst]x[aens][adenqst]x[adekrs]
Conservation:-1.0381.5010.874-0.9790.067-1.0332.032-0.610-1.0570.074-0.140-0.1490.458
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a6q_*_2391a6q   -239251DGIWDVMGNEELCHHHHTTS-HHHHHaaaaaabxaaaaa
1c3c_A_3971c3c   A397409EEVKKLVTKEELEHHHHTT--HHHHHaaaaaabxaaaaa
1elj_A_881elj   A88100EDLLNEFAPMAQDHHHHTTB-HHHHHaaaaaabxaaaaa
1fr2_B_651fr2   B6577PELSKNLNPSNKSHHHHTTS-HHHHHaaaaaabxaaaaa
1h1o_A_1591h1o   A162174NQIAKNITVAQMKHHHHTT--HHHHHaaaaaaxxaaaaa
1ji7_A_591ji7   A5971GKALLLLTKEDFRHHHHTT--HHHHHaaaaaaxxaaaaa
1jks_A_2381jks   A238250DEYFSNTSALAKDHHHHTTS-HHHHHaaaaaaxxaaaaa
1nf9_A_411nf9   A4153RYFLRPLPESLRAHHHHTTS-HHHHHaaaaaaxpaaaaa
1q5n_A_4111q5n   A411423DEVKQYFNPSQLDHHHHTT--HHHHHaaaaaabxaaaaa
1qz9_A_2851qz9   A295307LDVFAQTDMASLRHHHHTTS-HHHHHaaaaaabbaaaaa
1r6t_A_2471r6t   A252264VKIQKHVTFNQVKHHHHHT--HHHHHaaaaaabxaaaaa
1tki_A_2411tki   A241253EEAFKEISIEAMDHHHHTTS-HHHHHaaaaaaxxaaaaa
1vin_*_3441vin   -344356ADPYLKYLPSVIAHHHHTTS-HHHHHabwaaabxaaaaa
3mbp_*_833mbp   -8395KAFQDKLYPFTWDHHHHTTB-HHHHHaaaaaabxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a6q_*_2391a6q   *     MNMANGANESE (II) ION D - 239
1a6q_*_2391a6q   *     PO4PHOSPHATE ION D - 239
1a6q_*_2391a6q   *     MNMANGANESE (II) ION G - 240
1a6q_*_2391a6q   *     MNMANGANESE (II) ION D - 243
1h1o_A_1591h1o   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 159
1h1o_A_1591h1o   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 160
1h1o_A_1591h1o   A     GOLGLYCEROL L - 160
1h1o_A_1591h1o   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 161
1h1o_A_1591h1o   A     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 163
1h1o_A_1591h1o   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 164
1h1o_A_1591h1o   A     ZNZINC ION K - 166
1h1o_A_1591h1o   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 168
1h1o_A_1591h1o   A     ZNZINC ION I - 168
1h1o_A_1591h1o   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 176
1h1o_A_1591h1o   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 180
1h1o_A_1591h1o   A     ZNZINC ION S - 181
1ji7_A_591ji7   A     MSESELENOMETHIONINE G - 59
1ji7_A_591ji7   A     MSESELENOMETHIONINE A - 61
1ji7_A_591ji7   A     MSESELENOMETHIONINE L - 62
1ji7_A_591ji7   A     MSESELENOMETHIONINE L - 65
1ji7_A_591ji7   A     MSESELENOMETHIONINE R - 73
1nf9_A_411nf9   A     FMTFORMIC ACID Y - 42
1nf9_A_411nf9   A     FMTFORMIC ACID F - 43
1r6t_A_2471r6t   A     MSESELENOMETHIONINE F - 247
1r6t_A_2471r6t   A     MSESELENOMETHIONINE Y - 248
1r6t_A_2471r6t   A     MSESELENOMETHIONINE V - 251
1r6t_A_2471r6t   A     GOLGLYCEROL K - 253
1r6t_A_2471r6t   A     MSESELENOMETHIONINE I - 254
1r6t_A_2471r6t   A     GOLGLYCEROL H - 257
1r6t_A_2471r6t   A     MSESELENOMETHIONINE V - 258
1r6t_A_2471r6t   A     MSESELENOMETHIONINE V - 263
1r6t_A_2471r6t   A     MSESELENOMETHIONINE I - 266
1r6t_A_2471r6t   A     MSESELENOMETHIONINE F - 267
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1a6q_*_2391a6q   * MN2MN 2+ BINDING SITES.D - 239
1h1o_A_1591h1o   A S1BSO4 BINDING SITE FOR CHAIN AA - 171
1h1o_A_1591h1o   A S1BSO4 BINDING SITE FOR CHAIN AD - 175

Clusters included in this Subclass
CLUSTER: HH.3.40
CLUSTER: HH.4.47
CLUSTER: HH.5.36