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Information on SUBCLASS 2.3.5
Subclass Accession number: 2223
Subclass: 2.3.5 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 2 (>75 %)  
Number of loops: 8

Average sequence ID (%) : 13.5 +/- 14.9
Average RMSD (Å) : 0.675 +/- 0.249

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 90-135 rho (°): 45-90
Consensus Sequence: XXXphp
(φψ)-conformation: aabpaa
Pattern: [aklv][DEHPRST][ADERT][lmvy][aflm][akrs]xx[DNPST]x[DENR][deqrty][AILMVY]x
Conservation:-0.167-0.5620.7750.2760.0030.524-1.716-0.3940.815-0.4772.240-0.9820.747-1.083
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aua_*_1311aua   -131144LHEMNKVTSEERMLHHHHTTT--HHHHHaaaaaaabbaaaaa
1c3p_A_541c3p   A5467KEELLLFHTEDYINHHHHTTTS-HHHHHaaaaaaaxxaaaaa
1i39_A_661i39   A6982LDERMAAKTINEILHHHHTTTS-HHHHHaaaaaaabxaaaaa
1i60_A_381i60   A3952LPEYLKDHSLDDLAHHHHTTSS-HHHHHaaaaaaabbaaaaa
1li5_A_2771li5   A277290VRDVLKYYDAETVRHHHHHTTS-HHHHHaaaaaaabxaaaaa
1lva_A_4661lva   A470483RSRYFSRLPARVYQHHHH-TTS-HHHHHaaaaaaaxxaaaaa
1ov9_A_101ov9   A1326LRAYARELTIEQLEHHHHHTTS-HHHHHaaaaaaabxaaaaa
3gcb_*_213gcb   -2639ATTVLKNYNADDALHHHHHTTS-HHHHHaaaaaaabpaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aua_*_1311aua   *     BOGB-OCTYLGLUCOSIDE Y - 151
1i60_A_381i60   A     MSESELENOMETHIONINE K - 38
1i60_A_381i60   A     MSESELENOMETHIONINE L - 39
1i60_A_381i60   A     MSESELENOMETHIONINE P - 40
1lva_A_4661lva   A     Y1YTTRIUM ION A - 484
1lva_A_4661lva   A     Y1YTTRIUM ION E - 487

Clusters included in this Subclass
CLUSTER: HH.4.168
CLUSTER: HH.4.273
CLUSTER: HH.5.63
CLUSTER: HH.6.51